View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12913_low_54 (Length: 234)
Name: NF12913_low_54
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 51687276 - 51687449
Alignment:
| Q |
1 |
ttgaaaggtcccgtgaaaccgaacaacaaaacgacactgtcaatgttgttgcttgtgaggttgtccttttcgaacatttgttatggatgcttgaaaatgc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51687276 |
ttgaaaggtcccgtgaaacagaacaacaaaacgacactgtcaatgttgttgcttgtgaggttgtccttttcgaacatttgttatggatgcttgaaaatgc |
51687375 |
T |
|
| Q |
101 |
tgatcctcaacctgaatctcttgatgaacttgtcgatttttacgcttgttagagttaggttccaattcaacacc |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51687376 |
tgatcctcaacctgaatctcttgatgaacttgtcgatttttacgcttgttagagttagcttccaattcaacacc |
51687449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 19137252 - 19137160
Alignment:
| Q |
51 |
gcttgtgaggttgtccttttcgaacatttgttatggatgcttgaaaatgctgatcctcaacctgaatctcttgatgaacttgtcgatttttac |
143 |
Q |
| |
|
||||||||||||||| | ||||| ||| |||| |||||| |||| ||| ||||||||||||| ||||| | |||||||| || |||| |||| |
|
|
| T |
19137252 |
gcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactgatcctcaaccggaatcattggatgaactcgttgattattac |
19137160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University