View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12913_low_7 (Length: 589)
Name: NF12913_low_7
Description: NF12913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12913_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Original strand, 50549738 - 50550294
Alignment:
| Q |
16 |
attattctttaaaaccattacttgttccttcataacctttttcccactatttggtttatt---gttgtcgtcagtcatagaaggagaaacttcattgagg |
112 |
Q |
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| T |
50549738 |
attattctttaaaaccattacttgttccttcataacctttttcccactatttggtttattattgttgtcgtcagtcatagaaggagaaacttcattgagg |
50549837 |
T |
|
| Q |
113 |
ttctttatggggtcttcacgtatctttcttttcnnnnnnn----ccttatcccatggtatatg----cttcccacttgaactatttgaccctacatgaaa |
204 |
Q |
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| T |
50549838 |
ttctttatggggtcttcacgtatctttcttttcttttcttttttccttatcccatggtatatgtatgcttcccacttgaaatatttcaccctacatgaaa |
50549937 |
T |
|
| Q |
205 |
ggttaattggtcctt-------------gatagaggagagaatttattatacccctttattataggaatattttttccatgattagcattaaattgtttc |
291 |
Q |
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| T |
50549938 |
ggtcaattggtccttatcttcgttgattgatagaggagagaatttattata-------------ggaatattttttccatgattagcattaaattgtttc |
50550024 |
T |
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| Q |
292 |
ctattgtttctcgtcctatcactaactaccaaccaatcaccatgcgtttcttcaccagattgtaggtcctgtgagatattttccaaggatttaggaagat |
391 |
Q |
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| T |
50550025 |
----------tcctcctatcactaactaccaaccaatcaccatgcgtttcttcaccagattgtaggtcatgtgagatattttccaaggatttaggaagat |
50550114 |
T |
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| Q |
392 |
tagttgactcattgacaaccgtttcattactgtgatcttgttgtaccatagcgcttgcagctgtattttgggtgacctgaacactgtcaacaatcggagt |
491 |
Q |
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| T |
50550115 |
tagttgactcattgacaaccgtttcattactgtgatcttattgtaccatagcgcttgcagctgtattttgggtgacctgaacactgtcaacaatcggagt |
50550214 |
T |
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| Q |
492 |
gctgacaattgttttcatagccgccgttgtggtgaaattaggagtaacatgtccataacacccacaaccactacaaatca |
571 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50550215 |
gccgacaattgttttcatagccgccgttgtggtgaaattatgagtaacatgtccataacacccacaaccactacaaatca |
50550294 |
T |
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