View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12914_high_2 (Length: 517)
Name: NF12914_high_2
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 52671792 - 52671461
Alignment:
| Q |
20 |
aatagcttgcagaaaatgtgtgacaataggttcacacactcacacctgttgaactaccaccaaagtagacttacatcagtctttgcattaattaactttt |
119 |
Q |
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| T |
52671792 |
aatagcttgcagaaaatgtgtgacaataggttcacacactcacacctgttgaactaccaccaaagtagacttacatcagtctttgcatt---taactttt |
52671696 |
T |
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| Q |
120 |
ttagaacgttaggctacctatactttgcaaagtttttatttaatttaaggtaacagtgcatatgctttgttgaagcttttcttgctctggagttgctatt |
219 |
Q |
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| T |
52671695 |
ttagaacgttaggctacctatactttgcaaagtttttatttaatttaaggtaacagtgcatatgctttgttgaagcttttcttgctctggagttactatt |
52671596 |
T |
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| Q |
220 |
attgtattttctttcctcgctaatgaataacaactttatttatttgggttgtaaagacaagttttctattcttatataatgtagacaagttcttaatttt |
319 |
Q |
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| T |
52671595 |
attgtattttctttcctcgctaatgaataacaactttatttatttgggttgtaaagacaagttttctattcttatataatgtagacaagttcttaatttt |
52671496 |
T |
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| Q |
320 |
gaccttacataaactatcaatttgtttcatgtagt |
354 |
Q |
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| T |
52671495 |
gaccttacataaactatcaatttgtttcatgtagt |
52671461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 367 - 507
Target Start/End: Complemental strand, 52671384 - 52671244
Alignment:
| Q |
367 |
actacaaagagatggaaatggcttgagtacattcggtacgtcaacatataagagtatgaagaaatgtactcttaactacaaaccatagacatgcggtggg |
466 |
Q |
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| T |
52671384 |
actacaaagagatggaaatggcttgagtacattcggtacgtcaacatataagagtatgcagaaatgtactcttaactacaaaccatagacatgcggtggg |
52671285 |
T |
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| Q |
467 |
caaaaatgtatatattttatatctaatcgtttatgatgatg |
507 |
Q |
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| T |
52671284 |
caaaaatgtatatattttatatctaatcgtttatgaagatg |
52671244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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