View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12914_high_4 (Length: 334)
Name: NF12914_high_4
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 34850187 - 34849876
Alignment:
| Q |
5 |
tgtcgaataatatcatttaaattagtgataatatctttttctcnnnnnnnnnntttaaaataaaatcatatatttggagtttttaatcaattcatgtccg |
104 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34850187 |
tgtcgattaatatcatttaaattagtgataatatctttttctcaaaaaaaaaatt-aaaataaaatcatatatttggagtttttaatcaattcatgtccg |
34850089 |
T |
|
| Q |
105 |
tgagtaaataattaatctgcaacttggaagcgctgacaaagtttttgggaagaagctcacttcctccattcacaaacacgtcttcaaatttcaatcacaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34850088 |
tgagtaaataattaatctgcaacttggaagcgctgacaaagtttttgggaagaagctcacttcctccattcacaaacacgtcttcaaatttcaatcacaa |
34849989 |
T |
|
| Q |
205 |
gtttttgggaagataacttcatggctaaggaaaagttagaaattaatatgaaactaaagaaacaatttaaagtaaactaattagtcaaaatcagaaaaat |
304 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34849988 |
gtttttgggaagaaaacttcatggctaaggaaaagttagaaattaatatgaaactaaagaaacaatttaaagtaaactaattagtcaaaatcagaaaaat |
34849889 |
T |
|
| Q |
305 |
gtggggcatcaat |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34849888 |
gtggggcatcaat |
34849876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University