View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12914_low_1 (Length: 566)
Name: NF12914_low_1
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 38682590 - 38682115
Alignment:
| Q |
13 |
tcatcatatgttataagtgttaaataccaaagcatattataaaatttggttaagcatatatttttgtaattttaatttgattgttttaatacagaatatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38682590 |
tcatcatatgttataagtgttaaataccgaagcatattataaaatttggttaagcatatatttttgtaattttaatttgattgttttaatgcagaatatc |
38682491 |
T |
|
| Q |
113 |
atttagaatcgtttgtcatttaacataacaaaaacttcagtaaaataaatcatcaaaaaggttttatcatgtatgaggattttgtttcaaaataaaatac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38682490 |
atttagaatcgtttgtcatttaacataacaaaaacttcagtaaaataaatcatcaaaaaggttttatcatgtatgaggattttgtttcaaaataaaatac |
38682391 |
T |
|
| Q |
213 |
tgtataaactatttacagtcctgtaaaaatgatgtatacatgaa-aaagagnnnnnnnnnntgaatgagtagttgggttttccggctttacacaaaatcg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
38682390 |
tgtataaactatttacagtcctgtaaaaatgatgtatacatgaagaaaga---aaaaaaaatgaatgagtagttgggttttccagttttacacaaaatcg |
38682294 |
T |
|
| Q |
312 |
ttggagtcaaattggttttcattcattcttagtccaataattgactcagaccaagtcatataaccgattcttgatcatatactagtttaagcaaatttaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38682293 |
ttggagtcaaattggttttcattcattcttagtccaataattgactcagaccaagtcatataaccgattcttgatcatatactagtttaagcaaatttaa |
38682194 |
T |
|
| Q |
412 |
acgtcgttgtttctttatttttgatgaagtattcttcttgtgattctctgtaggatccttcttgcattcgtacactatt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38682193 |
acgtcgttgtttctttatttttgatgaagtattcttcttgtgattctctgtaggatccttcttgcattcgtacactatt |
38682115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 551
Target Start/End: Complemental strand, 38682062 - 38682000
Alignment:
| Q |
489 |
ttttgttttagaatatgttaacgactaccaatatttttcagaattgtagtattcgtcttatat |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38682062 |
ttttgttttagaatatgttaacgactaccaatatttttcagaattgtagtattcgtcttatat |
38682000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University