View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12914_low_10 (Length: 220)
Name: NF12914_low_10
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 5379117 - 5379283
Alignment:
| Q |
37 |
gttgttggaataattcttccnnnnnnngttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaaga-acggcatgtggtggagga |
135 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |
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| T |
5379117 |
gttgttggaataattcttcctttttttgttatgctgatgtatctcatagtttggtcttcattctcttcatttgttccaaggcacggcatgtggtggagga |
5379216 |
T |
|
| Q |
136 |
gtcacataggccatgaaggtatccttcaattatattattcactttttctattttaccaacccattat |
202 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5379217 |
gtcacataggccatgaaggtatctttcaattatattattcactttttctattttaccaacccattat |
5379283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 19001792 - 19001931
Alignment:
| Q |
64 |
gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaacgg-catgtggtggaggagtcacataggccatgaaggtatccttc |
162 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||| |||| |||| || | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19001792 |
gttatgttgatgtatctcatagtttcgtcctcattctcttcatctgttccaaggaccgacatgtggtggaggagtcacataggccatgaaggtatccttc |
19001891 |
T |
|
| Q |
163 |
aattatattattcactttttctattttaccaacccattat |
202 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
19001892 |
aattttattatacactttttctattttaccaacccattat |
19001931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 22680277 - 22680420
Alignment:
| Q |
64 |
gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttc |
162 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22680277 |
gttatgctggtgtatctcatagtttggtcctcattctcttcattttttccaaggaccggcatgtggtggaggagtcacataggccatgaaggtatccttc |
22680376 |
T |
|
| Q |
163 |
aattatat--ta-ttcac-tttttctattttaccaacccattat |
202 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
22680377 |
aattatatagtagttcacttttttctattttaccaacccattat |
22680420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 22325101 - 22325213
Alignment:
| Q |
65 |
ttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttca |
163 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22325101 |
ttatgctggtgtatctcatagtttggtcctcattctcttcattttttccaaggactggcatgtggtggaggagtcacataggccatgaaggtatcattca |
22325200 |
T |
|
| Q |
164 |
attatattattca |
176 |
Q |
| |
|
||||||| ||||| |
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|
| T |
22325201 |
attatataattca |
22325213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 23159612 - 23159731
Alignment:
| Q |
78 |
tctcatagtttggtcctcattctcttcatttgtttcaa--gaacggcatgtggtggaggagtcacataggccatgaaggtatccttcaattatattattc |
175 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| | || ||||||||| ||||| || | ||||||| |||||||||| ||||||||||||||| | |
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|
| T |
23159612 |
tctcatagtttggtcctcattttcttcatttttttccaaggaccggcatgtgatggagtagccgcataggcaatgaaggtattcttcaattatattatac |
23159711 |
T |
|
| Q |
176 |
a-ctttttctattttaccaa |
194 |
Q |
| |
|
| ||||||||||||||||| |
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|
| T |
23159712 |
agttttttctattttaccaa |
23159731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 20023104 - 20023222
Alignment:
| Q |
78 |
tctcatagtttggtcctcattctcttcatttgttt-caagaacgg-catgtggtggaggagtcacataggccatgaaggtatccttcaattatattattc |
175 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||| |||| || | |||||| ||||| || | ||||| |||||||||| ||||||||||||||| | |
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|
| T |
20023104 |
tctcattgtttggtcctcattttcttcattttttttcaaggaccgacatgtgatggagtagccgcatagaaaatgaaggtattcttcaattatattatac |
20023203 |
T |
|
| Q |
176 |
actttttctattttaccaa |
194 |
Q |
| |
|
| ||||||||||||||||| |
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| T |
20023204 |
aatttttctattttaccaa |
20023222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 22644422 - 22644279
Alignment:
| Q |
64 |
gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttc |
162 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22644422 |
gttatgctggtgtatctcatagtttggtcctcattctcttcattttttccaaggaccggcatgtggtggaggagtcacataggccatgaaggtatccttc |
22644323 |
T |
|
| Q |
163 |
aattatat--ta-ttcac-tttttctattttaccaacccattat |
202 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||| |
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|
| T |
22644322 |
aattatatagtagttcacttttttctattttaccaacccattat |
22644279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 27032001 - 27032144
Alignment:
| Q |
64 |
gttatgctgatgtatctcatagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttc |
162 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27032001 |
gttatgccggtgtatctcatagattggtcctcattctcttcattttttccaaggaccggcatgtggtggaggagtcacataggccatgaaggtatccttc |
27032100 |
T |
|
| Q |
163 |
aattatat--ta-ttcac-tttttctattttaccaacccattat |
202 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||| |
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|
| T |
27032101 |
aattatatagtagttcacttttttctattttaccaacccattat |
27032144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 23220180 - 23220302
Alignment:
| Q |
82 |
atagtttggtcctcattctcttcatttgtttcaagaac-ggcatgtggtggaggagtcacataggccatgaaggtatccttcaattatattattcac-tt |
179 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| || ||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||| || |
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|
| T |
23220180 |
atagtttggtcctcattctcttcattttttccaaggaccggcatgtagtggaggagtcacataggccatacaggtatccttcgattatataattcacttt |
23220279 |
T |
|
| Q |
180 |
tttctattttaccaacccattat |
202 |
Q |
| |
|
|||||||| |||||||||||||| |
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|
| T |
23220280 |
tttctattataccaacccattat |
23220302 |
T |
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