View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12914_low_3 (Length: 474)
Name: NF12914_low_3
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 408486 - 408801
Alignment:
| Q |
17 |
agtgtttgctttgagcctttggtggcagattatagctttatttggaattgttgcaatgattcaaatctgtttagctggatttcgcaaagtactcactaag |
116 |
Q |
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| T |
408486 |
agtgtttgctttgagcctttggtggcagattatagctttatttggaattgttgcaatggttcaaatctgtttagctggatttcgcaaagtactcactaag |
408585 |
T |
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| Q |
117 |
tgtagtagttagaaattaggaagcagtgttcacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacact |
216 |
Q |
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| T |
408586 |
tgtagtagttagaaattaggaagcagtgttcacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacact |
408685 |
T |
|
| Q |
217 |
tgccttcatcttgtaacttcttaatgatactttataactttttatgtaatagacgtaaattttcccaaactctttgtaactttttgaagagttgaaactt |
316 |
Q |
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| T |
408686 |
tgccttcatcttgtaacttcttaatgatactttataactttttatgtaatagacgtaaattttctcaaactctttgtaactttttgaagagttgaaactt |
408785 |
T |
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| Q |
317 |
tagggatagtttcaaa |
332 |
Q |
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| T |
408786 |
tagggatagtttcaaa |
408801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 412871 - 412959
Alignment:
| Q |
334 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatct--agctttttatctgttttctttacatgtatgt |
420 |
Q |
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| T |
412871 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatctaaagctttttatctgttttctttacatgtatgt |
412959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 462
Target Start/End: Original strand, 412982 - 413013
Alignment:
| Q |
431 |
ttaaaagcttctttcttattctctttaatgat |
462 |
Q |
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| T |
412982 |
ttaaaagcttctttcttattctctttaatgat |
413013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 462
Target Start/End: Complemental strand, 11655833 - 11655802
Alignment:
| Q |
431 |
ttaaaagcttctttcttattctctttaatgat |
462 |
Q |
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| T |
11655833 |
ttaaaagcttctttcttattctctttaatgat |
11655802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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