View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12914_low_4 (Length: 382)
Name: NF12914_low_4
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 33430541 - 33430850
Alignment:
| Q |
18 |
tcttcctcgttctctttgttgcacgtaattagtccatcattcttagtatagtaattaattatatattctgcatttgttatctttaactttcatcttacat |
117 |
Q |
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| T |
33430541 |
tcttcctcgttctctttgttgcacgtaattagtccatcattcttagtatagtaattaattatatattctgcatttgttatctttaactttcatcttacat |
33430640 |
T |
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| Q |
118 |
a----------------------tatatatctttaatttcatgtcaaaaagaagacatcaagtctcgaaaaaagaaggcctaaaccctaaagacatcaaa |
195 |
Q |
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| T |
33430641 |
acgttctttttcaaaaattaaagtatatatctttaatttcatgtcaaaaagaagacatcaagtctcgaaaaaagaaggcctaaaccctaaagacatcaaa |
33430740 |
T |
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| Q |
196 |
attatatatcaatttatttcttatgtctctattttaaattttttacccttctaattattaaaataacaaggataaactattattattactttagtttatt |
295 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33430741 |
ataatatatcaatttatttcttatgtctctattttaaattttttacccttctaattaataaaataacaaggataaactattattattactttagtttatt |
33430840 |
T |
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| Q |
296 |
gttccttact |
305 |
Q |
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|||||||||| |
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| T |
33430841 |
gttccttact |
33430850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 33431147 - 33431209
Alignment:
| Q |
305 |
taaaggttttgattagcaaattaatatctacatataatgttttaataaatattggtagtacttg |
368 |
Q |
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| T |
33431147 |
taaaggttttgattagcaaat-aatatctacatataatgttctaataaatattggtggtacttg |
33431209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 33435320 - 33435362
Alignment:
| Q |
18 |
tcttcctcgttctctttgttgcacgtaatt-agtccatcattc |
59 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33435320 |
tcttcctcgttctctttgttgcacgtaattaagtccatcattc |
33435362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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