View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12914_low_5 (Length: 341)

Name: NF12914_low_5
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12914_low_5
NF12914_low_5
[»] chr7 (1 HSPs)
chr7 (1-327)||(3416955-3417287)
[»] chr5 (2 HSPs)
chr5 (25-249)||(12541131-12541355)
chr5 (26-249)||(28385781-28386007)
[»] chr2 (3 HSPs)
chr2 (25-243)||(13440646-13440864)
chr2 (25-249)||(13448809-13449033)
chr2 (25-116)||(13455280-13455371)
[»] chr6 (1 HSPs)
chr6 (25-137)||(12589787-12589899)
[»] chr4 (4 HSPs)
chr4 (32-155)||(48958600-48958723)
chr4 (31-122)||(48962746-48962837)
chr4 (25-150)||(48911950-48912075)
chr4 (84-122)||(48974614-48974652)
[»] chr8 (1 HSPs)
chr8 (31-114)||(12641122-12641205)
[»] scaffold0536 (1 HSPs)
scaffold0536 (32-103)||(6163-6234)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 3417287 - 3416955
Alignment:
Q  1 tttctctagagtggttctccaaatagaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3417287 tttctctagagtggttctccaaatagaagatggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagt 3417188  T
Q  101 tcaatgaagttgttgacgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatgg 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417187 tcaatgaagttgttgacgataaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatgg 3417088  T
Q  201 tgataggaagaggaaagtttggaacgacataggaacttg------aatcagaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagac 294  Q
    ||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417087 tgataggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgtaaaaagtaaattatttgttctaagggattccatgagcaagac 3416988  T
Q  295 tggaaagacagacaaaacattgtatgtgaaatt 327  Q
    |||||| || |||||||||||||||||||||||    
T  3416987 tggaaaaacggacaaaacattgtatgtgaaatt 3416955  T

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Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 12541131 - 12541355
Alignment:
Q  25 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 124  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||  ||| ||    
T  12541131 agaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtag 12541230  T
Q  125 ccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaagtttggaa 224  Q
    ||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||||  ||||||||||||||||||||| || ||||||| |||||||    
T  12541231 cctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatacgatgaggaaaatttggaa 12541330  T
Q  225 cgacataggaacttgaatcagaatc 249  Q
    ||||||| ||||||||||| |||||    
T  12541331 cgacatacgaacttgaatccgaatc 12541355  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 28385781 - 28386007
Alignment:
Q  26 gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagc 125  Q
    |||| ||||||||||||||||||||||||||| | ||||||||| |||||||  | |||||||||||||||||||||||  |||||||||| |||| |||    
T  28385781 gaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttgatgatgtagc 28385880  T
Q  126 cattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtga---taggaagaggaaagtttgg 222  Q
    |  ||||||||| ||| ||||||||||||| |||||||||  | ||||||||||||||||||||||| |||| ||| |   ||  | || |||  |||||    
T  28385881 ctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacacaaggtaatattatcatgatgaagatttgg 28385980  T
Q  223 aacgacataggaacttgaatcagaatc 249  Q
    ||||||||| ||||||||||| |||||    
T  28385981 aacgacatatgaacttgaatctgaatc 28386007  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 13440646 - 13440864
Alignment:
Q  25 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 124  Q
    ||||| |||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||      
T  13440646 agaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgttgatgatgagt 13440745  T
Q  125 ccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaagtttggaa 224  Q
     | |||||||||| ||||||  ||||||||| |  || |||||| || |  |||||||| ||||| | ||||| ||| ||| || ||||||| |||||||    
T  13440746 gctttacttttgagcactgtcccaagcatcatttttaggaatttgctaattacctttggcggttttccgcacaaggttatacgatgaggaaaatttggaa 13440845  T
Q  225 cgacataggaacttgaatc 243  Q
    | ||| |||||||||||||    
T  13440846 caacaaaggaacttgaatc 13440864  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 13448809 - 13449033
Alignment:
Q  25 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 124  Q
    ||||| |||||||||||||||| |||||||||| | || |||||| |||||||| || ||||||||||||||||||||| |||||||||||| ||| |      
T  13448809 agaagttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttgatgattagt 13448908  T
Q  125 ccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaagtttggaa 224  Q
     | |||||||| | ||| || |||||||||| ||| |||||| ||| ||  |||||||| ||||| |  |||| ||||||| |  ||||||| |||||||    
T  13448909 gctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaa 13449008  T
Q  225 cgacataggaacttgaatcagaatc 249  Q
    | ||| ||||||||||||| |||||    
T  13449009 caacaaaggaacttgaatccgaatc 13449033  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 13455280 - 13455371
Alignment:
Q  25 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 116  Q
    ||||| |||||||| ||||||| ||||||||||||  ||||| || |||||||| || |||||||||||||||| |||| ||||||||||||    
T  13455280 agaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttga 13455371  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 12589899 - 12589787
Alignment:
Q  25 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 124  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||||||||  ||||||||| || ||||      
T  12589899 agaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagt 12589800  T
Q  125 ccattacttttga 137  Q
    |||||||||||||    
T  12589799 ccattacttttga 12589787  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 48958600 - 48958723
Alignment:
Q  32 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattac 131  Q
    ||||||||||||||| |||||||||| | | ||||||  |||||||  || |||||||| ||||||||||||||||||||||||| |||||  || ||||    
T  48958600 ggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttac 48958699  T
Q  132 ttttgaacactgtgtcaagcatca 155  Q
    ||||||  | ||| ||||||||||    
T  48958700 ttttgaggattgtctcaagcatca 48958723  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 48962746 - 48962837
Alignment:
Q  31 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatga 122  Q
    |||||| |||||||||||||||||||| | ||||||||| |||||||  || |||||||| || |||||||||  |||||||||||| ||||    
T  48962746 tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatga 48962837  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 48912075 - 48911950
Alignment:
Q  25 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 124  Q
    ||||| |||||||||||||||||| |||||||  |  |||||||| |||||||  ||| ||||||| || |||||||||   || |||||||| | ||      
T  48912075 agaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggatt 48911976  T
Q  125 ccattacttttgaacactgtgtcaag 150  Q
    || ||||||||||| ||||| |||||    
T  48911975 ccgttacttttgaaaactgtctcaag 48911950  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 48974614 - 48974652
Alignment:
Q  84 actcttctccatcaagttcaatgaagttgttgacgatga 122  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48974614 actcttctccatcaagctcagtgaagttgttgacgatga 48974652  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 12641205 - 12641122
Alignment:
Q  31 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgtt 114  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||  || || ||||| |||||||||||||  ||||||||    
T  12641205 tggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

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Target: scaffold0536 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 6234 - 6163
Alignment:
Q  32 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttca 103  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||  ||  ||||||| || |||||||||    
T  6234 ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

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