View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12914_low_7 (Length: 311)

Name: NF12914_low_7
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12914_low_7
NF12914_low_7
[»] chr8 (2 HSPs)
chr8 (14-285)||(13047349-13047620)
chr8 (247-289)||(32688732-32688774)
[»] chr7 (3 HSPs)
chr7 (179-289)||(15743255-15743365)
chr7 (231-289)||(15742096-15742154)
chr7 (231-289)||(23118309-23118367)
[»] chr4 (6 HSPs)
chr4 (179-289)||(30101326-30101436)
chr4 (229-289)||(52038914-52038974)
chr4 (231-289)||(13417600-13417658)
chr4 (231-289)||(48367387-48367445)
chr4 (231-289)||(56331690-56331748)
chr4 (148-182)||(29404818-29404852)
[»] chr1 (6 HSPs)
chr1 (179-289)||(28876514-28876624)
chr1 (193-289)||(51837532-51837628)
chr1 (231-289)||(37810817-37810875)
chr1 (231-289)||(28875335-28875393)
chr1 (231-289)||(44031803-44031861)
chr1 (179-221)||(51837487-51837529)
[»] chr3 (3 HSPs)
chr3 (179-289)||(6529261-6529372)
chr3 (179-289)||(30574839-30574945)
chr3 (231-289)||(30576021-30576079)
[»] chr6 (4 HSPs)
chr6 (179-289)||(1573011-1573121)
chr6 (231-289)||(11381399-11381457)
chr6 (231-289)||(1574222-1574280)
chr6 (231-289)||(29657203-29657261)
[»] chr5 (5 HSPs)
chr5 (229-289)||(20013895-20013955)
chr5 (231-289)||(41422225-41422283)
chr5 (231-289)||(14672316-14672374)
chr5 (231-289)||(41423387-41423445)
chr5 (230-289)||(17900175-17900233)
[»] chr2 (3 HSPs)
chr2 (231-289)||(4518762-4518820)
chr2 (231-289)||(44112623-44112681)
chr2 (231-282)||(44113183-44113234)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 13047349 - 13047620
Alignment:
Q  14 tcatcaattttggcatcaaattctatggaggtttggcgttgtactgattagtgccttttcggttattatagaaactattgattttctgattacagttctg 113  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047349 tcatcaatttcggcatcaaattctatggaggtttggcgttgtcctgattagtgccttttcggttattatagaaactattgattttctgattacagttctg 13047448  T
Q  114 gaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtttctttatctcagccttgaggacaagactgtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047449 gaaaagatacaaaaggccacttatgcatgtcattgcttggaagaataaactagtaccgaagaatcagtttctttatctcagccttgaggacaagactgtt 13047548  T
Q  214 tttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatttta 285  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  13047549 tttctagcagtcggtaatgttaggtgtcgggtggtattgatagggtaattgctgatgcagttagttatttta 13047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 32688774 - 32688732
Alignment:
Q  247 gtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  32688774 gtattgatagggtaactgctgatgcagtcagttattttaatat 32688732  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 15743255 - 15743365
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 278  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  15743255 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 15743354  T
Q  279 tattttaatat 289  Q
    |||||||||||    
T  15743355 tattttaatat 15743365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 15742096 - 15742154
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  15742096 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 15742154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 23118309 - 23118367
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||| ||||||||| ||||||| | |||||||||||||||||    
T  23118309 tgttaggtatcgggtggtattcatagggtaactgctgatccagttagttattttaatat 23118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 30101326 - 30101436
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 278  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  30101326 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 30101425  T
Q  279 tattttaatat 289  Q
    |||||||||||    
T  30101426 tattttaatat 30101436  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 52038974 - 52038914
Alignment:
Q  229 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||||| || ||||||||||||||||||| ||||||||| || |||||||| |||||    
T  52038974 aatgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatttaaatat 52038914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 13417600 - 13417658
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| ||||||||  || ||||||||||||||    
T  13417600 tgttaggtatcgggtggtattgatagggtaactgctgatgtagtaagttattttaatat 13417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 48367387 - 48367445
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  48367387 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 48367445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 56331690 - 56331748
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  56331690 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 56331748  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 29404852 - 29404818
Alignment:
Q  148 gcttggaagaataaactagtaccgaagaatcagtt 182  Q
    ||||||||||||||||||||||| |||||||||||    
T  29404852 gcttggaagaataaactagtacccaagaatcagtt 29404818  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 28876514 - 28876624
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 278  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||| || |||    
T  28876514 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtgactgctgatgcagtcagt 28876613  T
Q  279 tattttaatat 289  Q
    |||||||||||    
T  28876614 tattttaatat 28876624  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 51837532 - 51837628
Alignment:
Q  193 agccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    ||||||||||||||  ||||||||||||  |||||| ||||||||| || ||||| ||||||||||| | ||||||||| || ||||||||||||||    
T  51837532 agccttgaggacaacgctgtttttctagaggtcggtgatgttaggtatccggtggcattgatagggtgactgctgatgcagtcagttattttaatat 51837628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 37810817 - 37810875
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  37810817 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 37810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 28875335 - 28875393
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  28875335 tgttaggtatctggtggtattgatagggtgactgctgatgcagtcagttattttaatat 28875393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 44031861 - 44031803
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||  |||||||||||||    
T  44031861 tgttaggtatctggtggtattgatagggtaactgctgatgcagtcggttattttaatat 44031803  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 51837487 - 51837529
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagc 221  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  51837487 agtttctttaactcagccttgaggacaaggctgtttttctagc 51837529  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 6529372 - 6529261
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgc-tgatgcggttag 277  Q
    |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||| ||||||  | ||    
T  6529372 agtttctttaactcagccttgaggacaaggctgtttttctagcggtcggtaatgttaggtatccggtggtattgatagggtaactgcttgatgcaatcag 6529273  T
Q  278 ttattttaatat 289  Q
    ||||||||||||    
T  6529272 ttattttaatat 6529261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 30574945 - 30574839
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 278  Q
    |||||||||| |||||||||||||||||| ||||||||||||    ||| |||||| ||| || ||||||||||||||||||| |||||| || || |||    
T  30574945 agtttctttaactcagccttgaggacaaggctgtttttctag----cggaaatgtttggtatctggtggtattgatagggtaactgctgacgcagtcagt 30574850  T
Q  279 tattttaatat 289  Q
    |||||||||||    
T  30574849 tattttaatat 30574839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 30576079 - 30576021
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  30576079 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 30576021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 1573121 - 1573011
Alignment:
Q  179 agtttctttatctcagccttgaggacaagactgtttttctagcagtcggtaatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagt 278  Q
    |||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| || |||| |||||||||||| | ||||||||| || |||    
T  1573121 agtttctttaactcagccttgaggacaaggctgtttttctagcggccggtaatgttaggtatccggtgatattgatagggtgactgctgatgcagtcagt 1573022  T
Q  279 tattttaatat 289  Q
    |||||||||||    
T  1573021 tattttaatat 1573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 11381399 - 11381457
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  11381399 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttattttaatat 11381457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 1574280 - 1574222
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  1574280 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 1574222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 29657203 - 29657261
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| |||| |||| || ||||||||||||||    
T  29657203 tgttaggtatccggtggtattgatagggtaactgctaatgcagtcagttattttaatat 29657261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 20013955 - 20013895
Alignment:
Q  229 aatgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||||| || |||||||||||||||||||||||||||||  | ||||||||||||||    
T  20013955 aatgttaggtatcgggtggtattgatagggtaattgctgatgcaatcagttattttaatat 20013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 41422225 - 41422283
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||||||    
T  41422225 tgttaggtatctggtggtattgatagggtaactgctgatgcagtaagttattttaatat 41422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 14672316 - 14672374
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||| | ||||||||| || ||||||||||||||    
T  14672316 tgttaggtatccggtggtattgatagggtgactgctgatgcagtcagttattttaatat 14672374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 41423445 - 41423387
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  41423445 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 41423387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 17900233 - 17900175
Alignment:
Q  230 atgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    ||||||||| || ||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  17900233 atgttaggtatcgggtggtattga-agggtaactgctgatgcagtcagttattttaatat 17900175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 4518762 - 4518820
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||||||||||||||||| |||||| || || ||||||||||||||    
T  4518762 tgttaggtatctggtggtattgatagggtaactgctgacgcagtcagttattttaatat 4518820  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 44112623 - 44112681
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttattttaatat 289  Q
    |||||||| || ||||| ||||||||||||| ||||||||| || ||||||||||||||    
T  44112623 tgttaggtatccggtgggattgatagggtaactgctgatgcagtcagttattttaatat 44112681  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 44113234 - 44113183
Alignment:
Q  231 tgttaggtgtcaggtggtattgatagggtaattgctgatgcggttagttatt 282  Q
    |||||||| || ||||||||||||||||||| ||||||||| || |||||||    
T  44113234 tgttaggtatccggtggtattgatagggtaactgctgatgcagtcagttatt 44113183  T

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