View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12914_low_8 (Length: 300)
Name: NF12914_low_8
Description: NF12914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12914_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 45178913 - 45178637
Alignment:
| Q |
9 |
gagatgaaaaatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagatagaaaaaagaaattgatgcaggtactt |
108 |
Q |
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| T |
45178913 |
gagatgaaaaatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagatagaaaaaagaaattgatgcaggtactt |
45178814 |
T |
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| Q |
109 |
aacaaattagtatcagtatcagacaagtattcaatacaataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataagatctgtgtttc |
208 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
45178813 |
aacaaattagtatcagtatcaaacaagtattcaatacaataggtaaagataatgcaagtattagtgcttaataggttctatcaaataagatctgtgtttc |
45178714 |
T |
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| Q |
209 |
nnnnnnnacatttgctactatctagaatttgtttatatagcaacaacatagttaaaacaatggatggtggtgggata |
285 |
Q |
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| T |
45178713 |
attttttacatttgctactatctagaatttgtttatatagcaacaacatagttaaaacaatggatggtggtgggata |
45178637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 45168980 - 45168922
Alignment:
| Q |
140 |
caatacaataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataaga |
198 |
Q |
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| T |
45168980 |
caatagaataggtgaagacaatgcaaatattagtgcttcataggttctgtccaataaga |
45168922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 24123723 - 24123768
Alignment:
| Q |
140 |
caatacaataggtaaagataatgcaagtattagtgcttcataggtt |
185 |
Q |
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| T |
24123723 |
caatacaataggtgaagacaatgcaaatattagtgcttcataggtt |
24123768 |
T |
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