View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_12 (Length: 367)
Name: NF12915_high_12
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 4681602 - 4681238
Alignment:
| Q |
11 |
aatgggaatgacactaatacca---accaacctatactatacaatactataattttgagagcatttacgaggcagcagcagcccaatgacgtcaataaaa |
107 |
Q |
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| T |
4681602 |
aatgggaatgacactaataccaccaaccaacctatactatactatactataattttgagagcatttacgaggcagcagcagcccaatgacgtcaataaaa |
4681503 |
T |
|
| Q |
108 |
------aatcgagtataataataataata---ccacgcatattgaaat--caaaacgagaggaccaaacataaacactccctctcttcttcccattggtg |
196 |
Q |
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||| ||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4681502 |
taaaaaaatggagtataataataataataacaccacgcatactgaaatatcaaaacgagaggaccaaacataaacactccctctcttcttcccattggtg |
4681403 |
T |
|
| Q |
197 |
tttcatttcagt-----ctccacaatatggcggttgttggtgttctcgctttacaaggttctttcaacgaacacatagcaggca---tgttattcaac-t |
287 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
4681402 |
tttcatttcactctccactccacaatatggcggttgttggtgttctcgctttacaaggttctttcaacgaacacatagcaggcatgttgttattcaactt |
4681303 |
T |
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| Q |
288 |
tctctctttcttttctcttatttcaattttctcattcagcgtctattgcagttttaagaagattg |
352 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4681302 |
tctctgtttcttttctcttatttcaattttctcattcagtgtctattgcagttttaagaagattg |
4681238 |
T |
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