View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_18 (Length: 323)
Name: NF12915_high_18
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 33003582 - 33003280
Alignment:
| Q |
1 |
gcagcaccgacaacaccaagttcaccgccacctcctacaacatctattccacccccacctagtccactattttaaatgatcagatgttgctaaagttaag |
100 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33003582 |
gcagcaccgaccacaccaagttcacctccacctcctacaacatctactccacctccacctagtccactattttaaattatcagatgttgctaaagttaag |
33003483 |
T |
|
| Q |
101 |
ttaaaataatgttgaattgtaatcttactgctatttatgttaaaaggtttgaagtatatttggtttaattatgagaatatatttccataatttttattcc |
200 |
Q |
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||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33003482 |
ttaaaataatgttga-ttgtattcttagtgctatttatgttaaaaggttggaagtatatttggtttaattatgagaatatatttccagaatttttattcc |
33003384 |
T |
|
| Q |
201 |
gtgcttgcaagggacatatcttcttttatcgtaaacctcataataagtcacaaactttttgaaatagtcaatagtgtaaactttttgaaacttagaggac |
300 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33003383 |
gtgcttgcaaatgacatatcttattttatcgtaaacctcataataagtcacaaactttttgaaatagtcaacagtgtaaactttttgaaacttagaggac |
33003284 |
T |
|
| Q |
301 |
atat |
304 |
Q |
| |
|
|||| |
|
|
| T |
33003283 |
atat |
33003280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 33015151 - 33014850
Alignment:
| Q |
5 |
caccgacaacaccaagttcaccgccacctcctacaacatctattccacccccacctagtccactattttaaatgatcagatgttgctaaagttaagttaa |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||| |
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|
| T |
33015151 |
caccgacaacaccaagttcacctccacctcctacaacatctactccacctccacctagtccactattttaaattatcaaatgtagctaaagttaagttaa |
33015052 |
T |
|
| Q |
105 |
aataatgttgaattgtaatcttactgctatttatgttaaaaggtttgaagtatatttggtttaattatgagaatatatttccataatttttattccgtgc |
204 |
Q |
| |
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||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
33015051 |
aataatgttga-ttgtaatcttaatgttatttatgttaaaaggttggaagtatatttggtttaattatgagaatatatttccataatttttattcagtgc |
33014953 |
T |
|
| Q |
205 |
ttgcaagggacatatcttcttttatcgtaaacctcataataagtcacaaactttttgaaatagtcaatagtgtaaactttttgaaacttagaggacatat |
304 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33014952 |
ttgtaagtgacatatcttcttttatcgtaaacctcgtaataattcacaaactttttgaaatagtcaacgatgtaaactttttgaaacttagaggacatat |
33014853 |
T |
|
| Q |
305 |
att |
307 |
Q |
| |
|
||| |
|
|
| T |
33014852 |
att |
33014850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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