View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_20 (Length: 306)
Name: NF12915_high_20
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_20 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 33015406 - 33015123
Alignment:
| Q |
14 |
agaagaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33015406 |
agaagaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatg |
33015307 |
T |
|
| Q |
114 |
gcccggcacaacaaatccacctctaactcctctaactccattaataccaagtccaccattaataccaagtccacttctaactcctccacctccattagtt |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33015306 |
gcccggcacaacaaatccacctctaactcc---------attaataccaagtccaccattaataccaagtccacttctaactcctccagctccattagtt |
33015216 |
T |
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| Q |
214 |
ccaagtctacctccacctgtaactcctgcagctccattagtaccaactccacctccacctgcagcacctacaacaccaagtccacccccacct |
306 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||| |||| |||||| |
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| T |
33015215 |
ccaagtccacctccacctgtaactcctgcagctccattagtaccaagtccacctccacctgcaacaccgacaacaccaagttcacctccacct |
33015123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 33003866 - 33003583
Alignment:
| Q |
14 |
agaagaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33003866 |
agaagaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatg |
33003767 |
T |
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| Q |
114 |
gcccggcacaacaaatccacctctaactcctctaactccattaataccaagtccaccattaataccaagtccacttctaactcctccacctccattagtt |
213 |
Q |
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| T |
33003766 |
gcccggcacaacaaatccacctctaactcc---------attaataccaagtccaccattaataccaagtccagttctaattcctccagttccattagtt |
33003676 |
T |
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| Q |
214 |
ccaagtctacctccacctgtaactcctgcagctccattagtaccaactccacctccacctgcagcacctacaacaccaagtccacccccacct |
306 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
33003675 |
ccaagtccacctccacctgtaactcctgcagctccattagtaccaagtccacctccacctgcaacacctacaacaccaagtccacctccacct |
33003583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 33015571 - 33015466
Alignment:
| Q |
14 |
agaagaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatg |
113 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33015571 |
agaagaatgacgatgcaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattccaggcattccaggatg |
33015472 |
T |
|
| Q |
114 |
gcccgg |
119 |
Q |
| |
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|||||| |
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| T |
33015471 |
gcccgg |
33015466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 33004031 - 33003926
Alignment:
| Q |
14 |
agaagaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatg |
113 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
33004031 |
agaagaatgacgatgcaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacttggcccggtattccaggcattccaggatg |
33003932 |
T |
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| Q |
114 |
gcccgg |
119 |
Q |
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|||||| |
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| T |
33003931 |
gcccgg |
33003926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 33015733 - 33015631
Alignment:
| Q |
17 |
agaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcc |
116 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||| |
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| T |
33015733 |
agaatggcgatgcaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcctggtatttcgggcattcctggatggcc |
33015634 |
T |
|
| Q |
117 |
cgg |
119 |
Q |
| |
|
||| |
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| T |
33015633 |
cgg |
33015631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 33004193 - 33004091
Alignment:
| Q |
17 |
agaatggtgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcc |
116 |
Q |
| |
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||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||| |
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| T |
33004193 |
agaatggcgatccaagtacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcctggtatttcgggcattcctggatggcc |
33004094 |
T |
|
| Q |
117 |
cgg |
119 |
Q |
| |
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||| |
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| T |
33004093 |
cgg |
33004091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 33015918 - 33015844
Alignment:
| Q |
24 |
tgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcc |
98 |
Q |
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||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33015918 |
tgatgcaagttcggattgtttcaatatacctggacttcccggtgttccaggcctaccaacatggcccggtattcc |
33015844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 33004378 - 33004304
Alignment:
| Q |
24 |
tgatgcaagaacagattgcttcaatatacctggatttcccggtgttccaggcctaccaacatggcccggtattcc |
98 |
Q |
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||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
33004378 |
tgatgcaagttcggattgtttcaatatacctggacttcccggtgttccaggcctaccgacatggcccggtattcc |
33004304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 33004314 - 33004256
Alignment:
| Q |
61 |
cccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcccgg |
119 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33004314 |
cccggtattccaggcctaccgacatggcccggtattccaggcattccaggatggcccgg |
33004256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 33015854 - 33015796
Alignment:
| Q |
61 |
cccggtgttccaggcctaccaacatggcccggtattcccggcattccaggatggcccgg |
119 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
33015854 |
cccggtattccaggcctaccgacatggcccggtattccaggcattccaggatggcccgg |
33015796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 33003601 - 33003550
Alignment:
| Q |
255 |
accaactccacctccacctgcagcacctacaacaccaagtccacccccacct |
306 |
Q |
| |
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||||| ||||||||||||||||||||| || ||||||||| |||| |||||| |
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| T |
33003601 |
accaagtccacctccacctgcagcaccgaccacaccaagttcacctccacct |
33003550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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