View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_21 (Length: 291)
Name: NF12915_high_21
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 40800724 - 40800979
Alignment:
| Q |
15 |
gttccacagatgaagccacttcttctaacggaacaaattacatgcaataatatttcttgatgattgaagaactgtttctgtattctatttcctatttaat |
114 |
Q |
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| T |
40800724 |
gttccatagaggaagccacttcttctaacggtacgaattacatgcaata---tttcttgatgattgaagaactgtttttgtattctatttcctttttact |
40800820 |
T |
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| Q |
115 |
cttcttggttaatacaaattcagatataatgggaaatgttccgcattgatagataagctcctcatatataggatggttgccaaatttttctccatattat |
214 |
Q |
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| T |
40800821 |
cttcttggttaatacaaattcagatataatgggaaatgttccgcattgatagagaagctcctcatatataggatgactgccaaatttttctccatattat |
40800920 |
T |
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| Q |
215 |
ctctcggtctctttctaattcttttatgttgttgtttgcatgtgatttgagtccttatt |
273 |
Q |
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| T |
40800921 |
ctctcggtctctttctaatccttttatgttgttgtttgcatgtgatttgagtccttatt |
40800979 |
T |
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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 2249420 - 2249326
Alignment:
| Q |
67 |
tttcttgatgattgaagaactgtttctgtattctatttcctatttaatcttcttggttaatacaaattcagatataatgggaaatgttccgcatt |
161 |
Q |
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| T |
2249420 |
tttcttcatgattgaagcactatttctgtactctatttcttatctactcttctcggttaatataaattctgatataatggaaaatgttccgcatt |
2249326 |
T |
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