View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_23 (Length: 284)
Name: NF12915_high_23
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 785929 - 785666
Alignment:
| Q |
15 |
acaatgaaatggtttagaattagatttcttcccacttaacaagagattttgagttcaaatgagttaaaacttaacactaaaatgcagcggtattattcca |
114 |
Q |
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| T |
785929 |
acaatgaaatggtttagaattagatttcttcccatttaacaagagattttgagttcaaatgagttcaaacttaacactaaaatgcaactgtattattcca |
785830 |
T |
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| Q |
115 |
accctaagggttgtttcggtgatatacgttgggatttaagatgtgcatgtgctcct-----tctaggactcattcgaatcatcaaaatactaacaatttt |
209 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
785829 |
accctaagggttgtctcggtgatatacgttgggatttaagatgtgcatgtgctccttctactctaggactcattcgaatcatcaaaatactaacaatttt |
785730 |
T |
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| Q |
210 |
tgtgttggattattagtccttacaaagctttactcttacttcaattaggtctccaccagtgaac |
273 |
Q |
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| T |
785729 |
tgtgttggattattagtccttacaaagctttactcttacttcaattaggtctccaccagtgaac |
785666 |
T |
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