View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_24 (Length: 267)
Name: NF12915_high_24
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 14646184 - 14646281
Alignment:
| Q |
17 |
aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
114 |
Q |
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| T |
14646184 |
aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
14646281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 14796564 - 14796467
Alignment:
| Q |
17 |
aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
114 |
Q |
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| T |
14796564 |
aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
14796467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 15243556 - 15243459
Alignment:
| Q |
17 |
aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
114 |
Q |
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| T |
15243556 |
aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
15243459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 14796412 - 14796314
Alignment:
| Q |
169 |
gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca |
267 |
Q |
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| T |
14796412 |
gactcaagcacctgggctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca |
14796314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 15243404 - 15243306
Alignment:
| Q |
169 |
gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca |
267 |
Q |
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| T |
15243404 |
gactcaagcacctgggctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca |
15243306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 14646336 - 14646434
Alignment:
| Q |
169 |
gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca |
267 |
Q |
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| T |
14646336 |
gactcaagcacctggcctatttcttgtctgcattctttcccaaaatccttcccaaatttcttcaaaaactttgttgtcatctcacacccattgcagcca |
14646434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 26270424 - 26270519
Alignment:
| Q |
169 |
gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcag |
264 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26270424 |
gactcaagcacttggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcag |
26270519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 26270307 - 26270369
Alignment:
| Q |
52 |
taagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag |
114 |
Q |
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| T |
26270307 |
taagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgaacaaccag |
26270369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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