View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_27 (Length: 239)
Name: NF12915_high_27
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_27 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 45106555 - 45106775
Alignment:
| Q |
19 |
gcaccctctggtgaagctatggccgtgattctcatacaggttggttgttattcatcgtggacaggttttttcacttaatatgtttggattgccggttagt |
118 |
Q |
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| T |
45106555 |
gcaccctctggtgaagctatggccgtgattctcatacaggttggttgttattcatcgtggacaggtttttgcacttaatatgtttggattgccggttagt |
45106654 |
T |
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| Q |
119 |
ttggcgaacttacggtggcaccgtcattttgctgaaactccaaagtgtagattttgtcaaaatcatggtggtctcctgtgattatgttcaattcaccttc |
218 |
Q |
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| T |
45106655 |
ttggcgaacttacggtggcaccgtcattttgctgaaactccaaagtgtagattttgtcaaaatcatggtggtctcctgtgattatgttcaattcaccttc |
45106754 |
T |
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| Q |
219 |
aacccaaacatacacttagac |
239 |
Q |
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| T |
45106755 |
aacccaaacatacacttagac |
45106775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 37425148 - 37425063
Alignment:
| Q |
98 |
atgtttggattgccggttagtttggcgaacttacggtggcaccgtcattttgctgaaactccaaagtgtagattttgtcaaaatcat |
184 |
Q |
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| T |
37425148 |
atgtttggattgccgcggagttcggcaaattcacggtggcaccgtgattttg-tgaaactctaaagtgtggtttttgtcaaagtcat |
37425063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 9050099 - 9050036
Alignment:
| Q |
116 |
agtttggcgaacttacggtggcaccgtcattttgctgaaactccaaagtgtagattttgtcaaa |
179 |
Q |
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| T |
9050099 |
agtttgacgaaatcacagtgacacggtcattttgttgaaactccaaagtgtagtttttgtcaaa |
9050036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 22533834 - 22533752
Alignment:
| Q |
97 |
tatgtttggattgccggttagtttggcgaacttacggtggcaccgtcattttgctgaaactccaaagtgtagattttgtcaaa |
179 |
Q |
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| T |
22533834 |
tatgtttggattggcagtgagttttgcgaaattatagtggcactttgattttgctgaaactcgaaagtttagcttttgtcaaa |
22533752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 9082503 - 9082443
Alignment:
| Q |
128 |
ttacggtggcaccgtcattttgctgaaactccaaagtgtagattttgtcaaaatcatggtg |
188 |
Q |
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| T |
9082503 |
ttacggtggcactatgattttcttgaagctccaaagtgtaaattttgtaaaaatcatggtg |
9082443 |
T |
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