View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_high_3 (Length: 706)
Name: NF12915_high_3
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 488 - 697
Target Start/End: Complemental strand, 11080162 - 11079957
Alignment:
| Q |
488 |
ttgttgagatggagttaagtttcctggttgtaggtcatccattttaagagacaaagacagttgcggcttacatgcaacgttcaaatgacatgaattaagg |
587 |
Q |
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| T |
11080162 |
ttgttgagatggagttaagtttcctggttgtaggtcatccatttttagagacaaagacagttgcgacttacatgcaacgttcaaatgacatgaa----gg |
11080067 |
T |
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| Q |
588 |
atataatctttgaattttttgtataatattagtcgagagtggttctctaaatgaagattgacaaatatttgtacttgtatgtggaaaaaatgaaatgaag |
687 |
Q |
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| T |
11080066 |
atataatctttgaattttttgtataatattagtcgagagtggttctctaaatgaagattgacaaatatttgtacttgtatgtggaaaaaatgaaatgaag |
11079967 |
T |
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| Q |
688 |
tataatctac |
697 |
Q |
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| T |
11079966 |
tgtaatctac |
11079957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 62 - 287
Target Start/End: Complemental strand, 11080594 - 11080380
Alignment:
| Q |
62 |
aatcagcataacattattaagctagacaagcgtaagacacacagagcccacaataggaggaaataggaggaaaaagagtacaagtagtgtaatggattac |
161 |
Q |
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| T |
11080594 |
aatcagcataatattattaagctaggcaagcgcaagacacacagagcccgcaataggaggaaa----------aagagtacaagtagtgtaatggattaa |
11080505 |
T |
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| Q |
162 |
gtgcataattgtgtaaggcttattttttatccattgttgtataataagatgatgaatgttgttgctggctaaaccaagaacaaagttcttcgaaatggtc |
261 |
Q |
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| T |
11080504 |
gtacataattgtgtaagtcttattttttatccattgttgtataataagatgatgaatgttgttgctggctaaaccaagaacaaa-ctcttcaaaatggtc |
11080406 |
T |
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| Q |
262 |
cataaacgttattgtgattgcaacat |
287 |
Q |
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| T |
11080405 |
cataaacgttattgtgattgcaacat |
11080380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 360 - 483
Target Start/End: Complemental strand, 11080383 - 11080260
Alignment:
| Q |
360 |
acattattttggaaagaaacattcaaagccggtaccaaaggttattttcacttgggtgaggtttgttcgatcggtggtgcagtgtagatggagtggaagg |
459 |
Q |
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| T |
11080383 |
acattattttggaaagaaacattcaaagccggtaccaaaggttattttcacttgggtgaggtttgtttgatcggtggtgcagtgtagatggagtggaagg |
11080284 |
T |
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| Q |
460 |
tgagatgttgctattcttggagtt |
483 |
Q |
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| T |
11080283 |
tgagatgttgctattcttggagtt |
11080260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 593 - 691
Target Start/End: Original strand, 4156944 - 4157047
Alignment:
| Q |
593 |
atctttgaattttttgtataatattagtcgagagtggttctctaaatgaagattg-----acaaatatttgtacttgtatgtggaaaaaatgaaatgaag |
687 |
Q |
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| T |
4156944 |
atctttgaactttttgtataatatctgttgaaattggttctctaaatcaagaatgacaatacaaatatttatacttgtatgtggaaaaaacgaaatgaag |
4157043 |
T |
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| Q |
688 |
tata |
691 |
Q |
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|||| |
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| T |
4157044 |
tata |
4157047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 51042872 - 51042813
Alignment:
| Q |
65 |
cagcataacattattaagctagacaagcgtaagacacacagagcccacaataggaggaaa |
124 |
Q |
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| T |
51042872 |
cagcataattttattaagcaaggcaagcgcaagacacactaagcccacaataggaggaaa |
51042813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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