View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_1 (Length: 1220)
Name: NF12915_low_1
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 876; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 284 - 1216
Target Start/End: Complemental strand, 2627528 - 2626596
Alignment:
| Q |
284 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627528 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
2627429 |
T |
|
| Q |
384 |
aactagattttcctacctagaaacataccacaaacttgtttactagtcctcttgtgagtttgttaaccatgcttgtgatgattatccataatttaaaatg |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627428 |
aactagattttcctacctagaaacataccacaaactagtttactagtcctcttgtgagtttgttaaccatgcttgtgatgattatccataatttaaaatg |
2627329 |
T |
|
| Q |
484 |
gaaaaagtattatactatatgatattaatttgtcaatatttaccattttattgacataacgaagcttctatctcattcctatgttgaatagtatcttgat |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627328 |
gaaaaagtattatactatatgatattaatttgtcaatatttaccattttattgacataacgaagcttctatctcattcctatgttgaatagtatcttgat |
2627229 |
T |
|
| Q |
584 |
attaaaaaattatggtgtttatcattaggtgataatgtgaaggcgcatcaatgtccctctttgagtcagnnnnnnnttatcactgatgctataagaagat |
683 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
2627228 |
attaaaaaattatggtgtttatcattaggtgataatgtgaaggtgcatcaatgtccctctttgagtcagaaaaaaattaccactgatgctataagaagat |
2627129 |
T |
|
| Q |
684 |
tgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctga |
783 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627128 |
tgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctga |
2627029 |
T |
|
| Q |
784 |
actctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagag |
883 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627028 |
actctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagag |
2626929 |
T |
|
| Q |
884 |
catggaatggttgatatgtgctttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctaggttgcctg |
983 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2626928 |
catggaatggttgatatgtgctttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctagtttgcctg |
2626829 |
T |
|
| Q |
984 |
acatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgc |
1083 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2626828 |
acatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgc |
2626729 |
T |
|
| Q |
1084 |
atacatctcaaaaaataccagacctaggatctcacacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcct |
1183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2626728 |
atacatctcaaaaaataccagacctaggatctcaaacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcat |
2626629 |
T |
|
| Q |
1184 |
gaaattagcataatcttcactgatgatgtccat |
1216 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |
|
|
| T |
2626628 |
gaaactagcataatcttcactgatgaggtccat |
2626596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2627811 - 2627573
Alignment:
| Q |
1 |
actggtaaagcacaaggatgcagaagaaagatggagggagattattgtcttgcgtagtaatgcagaggtatgttcatgtggtgcagcagtgtgtcatgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627811 |
actggtaaagcacaaggatgcagaagaaagatggagggagattattgtcttgcgtagtaatgcagaggtatgttcatgtggtgcagcagtgtgtcatgag |
2627712 |
T |
|
| Q |
101 |
tggacatgattgctcgactggatcatcgctgaaagagtgaacaatactgtcttcacgagttggatgggaatgatggcaggggtggtttggttggcaggga |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627711 |
tggacatgattgctcgaccggatcatcgctgaaagagtgaacaatactgtcttcacgagttggatgggaatgatggcaggggtggtttggttggcaggga |
2627612 |
T |
|
| Q |
201 |
agcatttagatggagcaaagaagtagaatcatacggtga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
2627611 |
agcatttagatggagcaaagaagtagaatcatacggtga |
2627573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 705 - 969
Target Start/End: Complemental strand, 2638837 - 2638573
Alignment:
| Q |
705 |
tggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgc |
804 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||| |||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2638837 |
tggaaggacattctataccgttgtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgc |
2638738 |
T |
|
| Q |
805 |
cttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgc |
904 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||| |
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|
| T |
2638737 |
cttaagcccattccacatttggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgc |
2638638 |
T |
|
| Q |
905 |
tttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
969 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2638637 |
tttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
2638573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 971 - 1073
Target Start/End: Complemental strand, 2638526 - 2638424
Alignment:
| Q |
971 |
tctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
1070 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| |
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|
| T |
2638526 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaa |
2638427 |
T |
|
| Q |
1071 |
atg |
1073 |
Q |
| |
|
||| |
|
|
| T |
2638426 |
atg |
2638424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 793 - 899
Target Start/End: Original strand, 44003835 - 44003941
Alignment:
| Q |
793 |
gcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatg |
892 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||| | | || || ||| || ||||| ||||||| ||||| ||| |
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|
| T |
44003835 |
gcattctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatg |
44003934 |
T |
|
| Q |
893 |
gttgata |
899 |
Q |
| |
|
||||||| |
|
|
| T |
44003935 |
gttgata |
44003941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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