View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_10 (Length: 385)
Name: NF12915_low_10
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 36194048 - 36194406
Alignment:
| Q |
1 |
aagaacctttaatggaagaaggtagcgaatgaatacgtatctttggaagcttgccatgttggttaatacagtcattttgccaaccttaacaaccgttcca |
100 |
Q |
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| T |
36194048 |
aagaacctttaatggaagaaggtagcgaatgaatatgtatctttggaagcttgccatgttggttaatatagtcattttgccaaccttaacaaccgttcca |
36194147 |
T |
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| Q |
101 |
tctttgtttatccaaggttttgcttcgaaatattttaatccatagtcatgaagactttggtatctcaatgggtttctaacagaggaacccacatgatata |
200 |
Q |
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| T |
36194148 |
tctttgtttatccaaggttttgctttgaaatattttaatccatagtcatgaaaactttggtatctcaatgggtttctaacagaggaacccacatgatata |
36194247 |
T |
|
| Q |
201 |
ccccatctctaggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgcttatcaagatcatggtatattga |
300 |
Q |
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| T |
36194248 |
ccccatctctaggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgcttaccaagatcatggtatattga |
36194347 |
T |
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| Q |
301 |
aatgagataaaaattggagaaatcattagagaaagaaaacataacaatggatgtaaggc |
359 |
Q |
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| T |
36194348 |
aatgagataaaaattggagaaatcattagagatagaaaacataacaatgaatgtaaggc |
36194406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 36182055 - 36182123
Alignment:
| Q |
210 |
taggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgct |
278 |
Q |
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| T |
36182055 |
taggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctgct |
36182123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 19482993 - 19482922
Alignment:
| Q |
210 |
taggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgcttat |
281 |
Q |
| |
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|||| |||||||||||||| || || |||||||| |||| ||| ||||||||||||||||||||||| |||| |
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| T |
19482993 |
taggatgatttgcatgagctacaatggccactaatattgaattcaccaccatgtcagctggtatctgattat |
19482922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 19506454 - 19506386
Alignment:
| Q |
211 |
aggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgctt |
279 |
Q |
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| T |
19506454 |
aggttgatttgcatgacttaccatggccactagcattgcattcaccaccatatcagcagggatctgctt |
19506386 |
T |
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