View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_11 (Length: 370)
Name: NF12915_low_11
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 31127937 - 31128245
Alignment:
| Q |
7 |
gcagcacagatgaatgaaatcttattttatgcataaactaaggttgtgtaggtaattttgtagtttacatttctcgtctaaattaagaataaaattatga |
106 |
Q |
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| T |
31127937 |
gcagcacaaatgaatgaaatcttattttatgcataaactaaggttgtgtaggtaattttgtagtttacatttctcgtctaaattaagaataaaattatga |
31128036 |
T |
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| Q |
107 |
cttttattatttaatggaaattatttcaatctgtgctatgatctgttttcaggcatgtgtttttacttatttcatatagaactggtgtatccgatgtagg |
206 |
Q |
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| T |
31128037 |
cttttattatttaatggaaattatatcaatctgtgcta-------------ggcatgtgtttttacttatttcata--gaactggtgtatccaatgtagg |
31128121 |
T |
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| Q |
207 |
tttctgtaatggaatatgtgatgctttatatatataagtgtgtgccatttcttcttatttggtgtcacaaatatatgaatgcatcctttgatgtttgtta |
306 |
Q |
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| T |
31128122 |
tttctgtaatggaatatgtgatgctttata--tataagtgtgtgccatttcttcttatttggtgtcacaaatatatgaatgcatcctttgatgtttgtta |
31128219 |
T |
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| Q |
307 |
atatatgagagattcaactgtcctaa |
332 |
Q |
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| T |
31128220 |
atatatgagagattcaactgtcctaa |
31128245 |
T |
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