View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_13 (Length: 366)
Name: NF12915_low_13
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 43065431 - 43065732
Alignment:
| Q |
39 |
atcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttctattcatgcacgtgttta |
138 |
Q |
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| T |
43065431 |
atcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcgattcatgcacatgttta |
43065530 |
T |
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| Q |
139 |
atcgcaattctgaatcctatcgnnnnnnnatttatgaatcgctagttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcatttta |
238 |
Q |
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| T |
43065531 |
atcgcaattctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcatttta |
43065630 |
T |
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| Q |
239 |
acattaccatgccattattatattatcgtaatgnnnnnnnnnnagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctg |
338 |
Q |
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| T |
43065631 |
acattaccatgccattattatattatcgtaatg--ttttttttagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctg |
43065728 |
T |
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| Q |
339 |
tata |
342 |
Q |
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|||| |
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| T |
43065729 |
tata |
43065732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 43047482 - 43047402
Alignment:
| Q |
40 |
tcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
120 |
Q |
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| T |
43047482 |
tcataatcaattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
211 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
261 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
63 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
115 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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