View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12915_low_14 (Length: 361)
Name: NF12915_low_14
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 146 - 342
Target Start/End: Complemental strand, 27562186 - 27561990
Alignment:
| Q |
146 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27562186 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
27562087 |
T |
|
| Q |
246 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattgg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
27562086 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggaaaatgatcaacttcaacattgg |
27561990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 147 - 342
Target Start/End: Complemental strand, 36669239 - 36669045
Alignment:
| Q |
147 |
gaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatct |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
36669239 |
gaacttcaggtttgtaaatttgaactatctgcaatggttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatct |
36669141 |
T |
|
| Q |
247 |
tttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattgg |
342 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
36669140 |
tttcatgtatgttta-ttccagaatgaactaaatgatgataagtatgtacgcacttcccgagtatactctttggcaaaggatcaacttcaacattgg |
36669045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 27562377 - 27562234
Alignment:
| Q |
4 |
tttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgattctgtatgagatatatg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27562377 |
tttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgattctgtctgagatatatg |
27562278 |
T |
|
| Q |
104 |
cttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
147 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27562277 |
cttggctgatgtcatagatagtgaattctgatcgtctttctgag |
27562234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 36669435 - 36669288
Alignment:
| Q |
1 |
gggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgattct--gtatgagat |
98 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||||| ||||| | ||||||||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
36669435 |
gggtttgtctgagttgaagaattcaattgaggaagtgaaggttttattttt-gtgatttctttccttctgtcattcatttgtcgattctctgtctaagat |
36669337 |
T |
|
| Q |
99 |
atatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
147 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36669336 |
ttatgcttggctgatatcatagatagtgaatgctgatcgtctttctgag |
36669288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 334
Target Start/End: Complemental strand, 29411725 - 29411540
Alignment:
| Q |
146 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
245 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| ||| | |||| | | |||||||||||||||||||||| |
|
|
| T |
29411725 |
agaacttcaggtttgtcaatttgagctatctgcaatggtgttatcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatc |
29411626 |
T |
|
| Q |
246 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttc |
334 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
29411625 |
ttttc----gtgtttatttccagaatgaactaaatgatgataagtatgtacgcaattcccgagtatactctttggcaaatgatcaacttc |
29411540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 29411924 - 29411773
Alignment:
| Q |
1 |
gggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgattt-ctttccttctgtcattcattt--gtcgattct--gtatga |
95 |
Q |
| |
|
||||||||| | ||||||| | |||||||||||||||| ||||| |||||| ||||| ||||||||| ||||||||| ||||||||| || | | |
|
|
| T |
29411924 |
gggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttccaccattcatttttgtcgattctttgtctaa |
29411825 |
T |
|
| Q |
96 |
gatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
147 |
Q |
| |
|
||| |||| || ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29411824 |
gatgtatgtttggctgatgtcatagatcgtgaatgctgatcgtctttctgag |
29411773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 26928903 - 26928772
Alignment:
| Q |
14 |
ttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat--tctgtatgagatatatgcttcgctg |
111 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||| ||||| | |||||||||||| |||| |
|
|
| T |
26928903 |
ttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgattctctgtctaagatatatgcttggctg |
26928804 |
T |
|
| Q |
112 |
atgtcatagatagtgaatgctgatcgtctttc |
143 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |
|
|
| T |
26928803 |
atgtcacagatagtgaatgatgatcgtctttc |
26928772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 26928703 - 26928621
Alignment:
| Q |
179 |
aatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
26928703 |
aatggttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta |
26928621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University