View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12915_low_16 (Length: 328)
Name: NF12915_low_16
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 29165127 - 29165349
Alignment:
| Q |
89 |
ggaatcccaaagttaattaggcctagacaaataatatatggtttgatgctcatacggagacgggcgagcttcacgctgacttacataagcaaaaccaact |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29165127 |
ggaatcccaaagttaattaggcctagacaaataatatatggtttgatgctcatacagagacgggcgagcttcacgctgacttacataagcaaaaccaact |
29165226 |
T |
|
| Q |
189 |
tcatcatcctggaaaaaagaa-----aagaaatataatgttagaaataacatacacagaataattgtgattgtacaatagcatgtaaatatagcaaataa |
283 |
Q |
| |
|
|| ||||||||||||||| || |||||||||| ||||||||||||||| |||| |||||| |||| ||||| || |||||||||||||||||||| |
|
|
| T |
29165227 |
tcttcatcctggaaaaaaaaaaaaacaagaaatatacagttagaaataacatatacagtataattatgatagtacagtatcatgtaaatatagcaaataa |
29165326 |
T |
|
| Q |
284 |
gctgatgcttatctttttataat |
306 |
Q |
| |
|
| | ||| ||||||||||||||| |
|
|
| T |
29165327 |
ggtaatgtttatctttttataat |
29165349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 29165061 - 29165107
Alignment:
| Q |
42 |
tgagtaaccaggacgactatacaatattttgaattccagaagaaaag |
88 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
29165061 |
tgagtaaccaggacgactttacaaaattttgaattcaagaagaaaag |
29165107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 327
Target Start/End: Complemental strand, 6178505 - 6178476
Alignment:
| Q |
298 |
ttttataatgagaaatgatatttgtacaac |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6178505 |
ttttataatgagaaatgatatttgtacaac |
6178476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 51389160 - 51389124
Alignment:
| Q |
292 |
ttatctttttataatgagaaatgatatttgtacaacc |
328 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
51389160 |
ttatatttttttaatgagaaatgatatttgtacaacc |
51389124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 43650629 - 43650601
Alignment:
| Q |
298 |
ttttataatgagaaatgatatttgtacaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43650629 |
ttttataatgagaaatgatatttgtacaa |
43650601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University