View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_17 (Length: 326)
Name: NF12915_low_17
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 40385531 - 40385715
Alignment:
| Q |
1 |
accaccaaaccaagcctaccgttattgaggccgacatatacaaatggagtaagaaaccacttgcatacctctgcctcaacaacctaaacagcaaaaaact |
100 |
Q |
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| T |
40385531 |
accaccaaaccacgcctaccggtattgaggccgacatatacaaatggagtaagaaaccacttgcatacctctgcctcaacaacctaaacagcaaaaaact |
40385630 |
T |
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| Q |
101 |
gcccagccacctaaaggaataccccaccgaaatctcaggcagcagctgtgcattccatagcagtaaaaatctgctcaccacccac |
185 |
Q |
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| T |
40385631 |
gcccagccacctaaaggaataccccaccgaaatctcaggcagcagctgtgcattccatagcagtaaaaatctgctcaccacccac |
40385715 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 40385786 - 40385840
Alignment:
| Q |
256 |
gacagccgcaaaaacacctactcatccgaccttcgcacagtcacagccagttagg |
310 |
Q |
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| T |
40385786 |
gacagctgcaaaaacaccaactcacccgaccttcgcacagtcacagccggttagg |
40385840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 41600796 - 41600702
Alignment:
| Q |
23 |
tattgaggccgacatatacaaatggagtaagaaaccacttgcatacctctgcctcaacaacctaaacagcaaaaaact-gcccagccacctaaag |
116 |
Q |
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| T |
41600796 |
tattgaggccgacatatacaaatggaacaagaaaccacttgcataccactgcctcaactacctaaaaagcccaaaactagcccagccaccaaaag |
41600702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 7752528 - 7752622
Alignment:
| Q |
23 |
tattgaggccgacatatacaaatggagtaagaaaccacttgcatacctctgcctcaacaacctaaacag-caaaaaactgcccagccacctaaag |
116 |
Q |
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| T |
7752528 |
tattgaggccgacatatacaaatggaacaagaaaccacttgcataccattgcctcaactacctaaaaagcccaaaaatagcccagccaccgaaag |
7752622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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