View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_2 (Length: 708)
Name: NF12915_low_2
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Complemental strand, 53096784 - 53096085
Alignment:
| Q |
1 |
acttcattttgaccttgttatgtatcctaatttcctccacccccttcatttctgctcatccaaattcgatggannnnnnnncttaaggtcttctgctgcc |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53096784 |
acttcattttgaccttgttatgtagcctaatttcctccacccccttcatttctgctcatccaaattcgatggattttttttcttaaggtcttctgctgcc |
53096685 |
T |
|
| Q |
101 |
gctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaactaaaaattca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096684 |
gctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaactaaaaattca |
53096585 |
T |
|
| Q |
201 |
tgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgcactccactcaaatgcctattagttgtttccaataataaatgtttaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096584 |
tgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgctctccactcaaatgcctattagttgtttccaataataaatgtttaat |
53096485 |
T |
|
| Q |
301 |
gacaatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagtttagaagttccn |
400 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096484 |
gacgatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagtttagaagttcca |
53096385 |
T |
|
| Q |
401 |
nnnnnncatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096384 |
aaaaaacatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaa |
53096285 |
T |
|
| Q |
501 |
atgggactagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttcagcagcagtg |
600 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096284 |
atgggacgagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttcagcagcagtg |
53096185 |
T |
|
| Q |
601 |
ccattatcttgacatatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttggtgatgatgtcc |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53096184 |
ccattatcttgacatatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttggtaatgatgtcc |
53096085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 412 - 561
Target Start/End: Original strand, 1369335 - 1369483
Alignment:
| Q |
412 |
tgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactaga |
511 |
Q |
| |
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|||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||| |
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| T |
1369335 |
tgccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgaga |
1369433 |
T |
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| Q |
512 |
aatggaaatagttttgatgttggaacagttcattctgctagtttggacat |
561 |
Q |
| |
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||||||||||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
1369434 |
aatggaaatagttttgatgctggaacagttcatactactagtttggacat |
1369483 |
T |
|
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