View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12915_low_22 (Length: 291)

Name: NF12915_low_22
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12915_low_22
NF12915_low_22
[»] chr7 (9 HSPs)
chr7 (10-275)||(39128416-39128682)
chr7 (84-275)||(39478363-39478554)
chr7 (84-181)||(32089264-32089361)
chr7 (84-181)||(32096737-32096834)
chr7 (84-181)||(41706628-41706725)
chr7 (84-181)||(41812161-41812258)
chr7 (84-181)||(32093021-32093118)
chr7 (84-181)||(32087909-32088006)
chr7 (89-127)||(32089075-32089113)
[»] chr8 (4 HSPs)
chr8 (84-181)||(21634805-21634902)
chr8 (84-158)||(5515537-5515611)
chr8 (140-178)||(10583097-10583135)
chr8 (139-181)||(32735650-32735692)
[»] chr6 (5 HSPs)
chr6 (84-181)||(26217233-26217330)
chr6 (102-181)||(7618947-7619026)
chr6 (122-182)||(11187904-11187964)
chr6 (101-173)||(18871931-18872004)
chr6 (108-166)||(6845985-6846043)
[»] chr3 (8 HSPs)
chr3 (84-181)||(38044520-38044617)
chr3 (84-181)||(48837987-48838084)
chr3 (85-181)||(50152354-50152450)
chr3 (84-177)||(50903990-50904083)
chr3 (85-181)||(50916154-50916254)
chr3 (145-181)||(147942-147978)
chr3 (143-179)||(50823392-50823428)
chr3 (143-179)||(50852433-50852469)
[»] chr1 (7 HSPs)
chr1 (84-181)||(31141947-31142044)
chr1 (91-170)||(30272473-30272551)
chr1 (84-149)||(27402434-27402499)
chr1 (97-170)||(27981698-27981771)
chr1 (141-181)||(34470026-34470066)
chr1 (144-181)||(6760094-6760131)
chr1 (144-180)||(520521-520557)
[»] scaffold0856 (1 HSPs)
scaffold0856 (91-180)||(4895-4984)
[»] chr2 (3 HSPs)
chr2 (88-162)||(32271347-32271421)
chr2 (84-181)||(43741444-43741541)
chr2 (146-181)||(20940535-20940570)
[»] chr4 (5 HSPs)
chr4 (89-138)||(8762982-8763031)
chr4 (89-163)||(7777910-7777985)
chr4 (89-163)||(7772302-7772377)
chr4 (89-163)||(7792702-7792777)
chr4 (134-183)||(19260976-19261025)
[»] chr5 (4 HSPs)
chr5 (144-181)||(8058720-8058757)
chr5 (146-181)||(17013884-17013919)
chr5 (138-177)||(18352643-18352682)
chr5 (143-181)||(29176661-29176699)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 39128416 - 39128682
Alignment:
Q  10 gagatgaataaggttcttcaaaagggaaaacgcgggtgaagagggaaaatcgaaggnnnnnnnnnnnnnnnnnn-tttggaccatttctcgatttgtgcg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||    
T  39128416 gagatgaataaggttcttcaaaagggaaaacgcgggtgaagagggaaaatcgaaggaaaaaaatgacaaaaaaaatttggaccatttctcgatttgtgcg 39128515  T
Q  109 tgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacgttaattggagtgtgctagcgtaatat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39128516 tgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacgttagttggagtgtgctagcgtaatat 39128615  T
Q  209 aaacagtgaatatttctttcatgtaagcgatttgggactattttcacaactaaaacaacgcacttac 275  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  39128616 aaacagtgaatatttctttcatgtaatcgatgtgggactattttcacaactaaaacaacgcacttac 39128682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 84 - 275
Target Start/End: Complemental strand, 39478554 - 39478363
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacgt 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478554 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacgt 39478455  T
Q  184 taattggagtgtgctagcgtaatataaacagtgaatatttctttcatgtaagcgatttgggactattttcacaactaaaacaacgcacttac 275  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39478454 tagttgaagtgtgctagcgtaatataaacagtgaatatttctttcatgtaagcgatgtgggactattttcacaactaaaacaacgcacttac 39478363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 32089264 - 32089361
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089264 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 32089361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 32096737 - 32096834
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096737 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 32096834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 41706628 - 41706725
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706628 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 41706725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 41812258 - 41812161
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812258 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 41812161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 32093021 - 32093118
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32093021 tttggaccatttctcgatttgtgcgtgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 32093118  T

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Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 32087909 - 32088006
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  32087909 tttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgttaatcttctctgtatcgttccaattttatcagatgtccccgaagggac 32088006  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 32089113 - 32089075
Alignment:
Q  89 accatttctcgatttgtgcgtgtcatccttgcgcagggg 127  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32089113 accatttctcgatttgtgcgtgtcatccttgcgcagggg 32089075  T

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Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 21634805 - 21634902
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634805 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 21634902  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 5515611 - 5515537
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaatt 158  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  5515611 tttggaccatttctcgatttgtgcgtgtcatctttgcgcaagggccatgctaatcttctctgtatcgttccaatt 5515537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 10583097 - 10583135
Alignment:
Q  140 tctctgtatcgttccaattttatcggatgtccccgaagg 178  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  10583097 tctctgtatcgtttcaattttatcggatgtccccgaagg 10583135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 32735692 - 32735650
Alignment:
Q  139 ttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    |||||||||||||||||||||||| |||||||| |||| ||||    
T  32735692 ttctctgtatcgttccaattttatgggatgtcctcgaatggac 32735650  T

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Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 26217233 - 26217330
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217233 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 26217330  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 7618947 - 7619026
Alignment:
Q  102 ttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    |||||||||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7618947 ttgtgcgtgtcatctttgcgcatggatcatgctaatcttctctgtatcattccaattttatcggatgtccccgaagggac 7619026  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 11187964 - 11187904
Alignment:
Q  122 caggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggacg 182  Q
    |||||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||    
T  11187964 caggggccatgctaatcttctctgtatcgttccaatttttccggacgtcctcgaagggacg 11187904  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 18871931 - 18872004
Alignment:
Q  101 tttgtgcgtgtcatccttgcgca-ggggccatgctaatcttctctgtatcgttccaattttatcggatgtcccc 173  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||| || ||| |||||| |||||||||    
T  18871931 tttgtgcgtgtcatctttgcgcaaggggccatgctaatcttgtctgtatcatttcaactttatcagatgtcccc 18872004  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 6846043 - 6845985
Alignment:
Q  108 gtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcgga 166  Q
    |||| ||||||||||||||| | || ||||||||| | |||||||||||||||||||||    
T  6846043 gtgtgatccttgcgcaggggtcctgttaatcttctttatatcgttccaattttatcgga 6845985  T

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Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 38044520 - 38044617
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044520 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 38044617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 48838084 - 48837987
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48838084 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 48837987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 50152450 - 50152354
Alignment:
Q  85 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  50152450 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcagatgtccccaaagggac 50152354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 50904083 - 50903990
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaag 177  Q
    |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50904083 tttgaaccatttctcgaattgtgcgtgtcatccttgcgcaggggccttgctaatcttctctgtatcgttccaattttatcggatgtccccgaag 50903990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 50916154 - 50916254
Alignment:
Q  85 ttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccat----gctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 180  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||    || |||||||||| |||||||||||||||||||||||| ||| ||||||    
T  50916154 ttggaccatttctcaatttgtgcgtgtcatccttgtgcaagggccatccatgccaatcttctctatatcgttccaattttatcggatgttcccaaaggga 50916253  T
Q  181 c 181  Q
    |    
T  50916254 c 50916254  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 147978 - 147942
Alignment:
Q  145 gtatcgttccaattttatcggatgtccccgaagggac 181  Q
    |||||||||||||||||||||||||||||||||||||    
T  147978 gtatcgttccaattttatcggatgtccccgaagggac 147942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 50823428 - 50823392
Alignment:
Q  143 ctgtatcgttccaattttatcggatgtccccgaaggg 179  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50823428 ctgtatcgttccaattttatcggatgtccctgaaggg 50823392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 50852433 - 50852469
Alignment:
Q  143 ctgtatcgttccaattttatcggatgtccccgaaggg 179  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50852433 ctgtatcgttccaattttatcggatgtccctgaaggg 50852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 31141947 - 31142044
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31141947 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 31142044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 30272551 - 30272473
Alignment:
Q  91 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtc 170  Q
    ||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  30272551 catttctcgatttgtgcgtgtcattgttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 30272473  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 27402434 - 27402499
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatc 149  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  27402434 tttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgctaattttttctgtatc 27402499  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 27981771 - 27981698
Alignment:
Q  97 tcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtc 170  Q
    ||||||||||| ||||||||||||  ||||  |||||| ||||||||| ||| ||| |||||||||||||||||    
T  27981771 tcgatttgtgcatgtcatccttgcatagggctcatgctgatcttctctatattgtttcaattttatcggatgtc 27981698  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 34470066 - 34470026
Alignment:
Q  141 ctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  34470066 ctctgtatcattccaattttatcggatgtccccgaagggac 34470026  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 6760131 - 6760094
Alignment:
Q  144 tgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6760131 tgtatcgttccaattttatcggatgtccctgaagggac 6760094  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 520521 - 520557
Alignment:
Q  144 tgtatcgttccaattttatcggatgtccccgaaggga 180  Q
    |||||||||||||||||||||||||| || |||||||    
T  520521 tgtatcgttccaattttatcggatgttccggaaggga 520557  T

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Target: scaffold0856 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 4895 - 4984
Alignment:
Q  91 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 180  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  4895 catttctcgatttgtgcgtgtcatccttgcgcatgggccatgctgatcttctctgtatcattccaattttatcgaatgtccccgaaggga 4984  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 32271347 - 32271421
Alignment:
Q  88 gaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  32271347 gaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgataatcttctttgtatcgttccaattttat 32271421  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 43741541 - 43741444
Alignment:
Q  84 tttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||||||| ||||| |||  |||||||||||||||||| ||||||||    
T  43741541 tttggaccatttctcgattggtgcgtgtcatccttgtgcaggagccatgttaatcttctatgtattgttttaattttatcggatgtccctgaagggac 43741444  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 20940570 - 20940535
Alignment:
Q  146 tatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20940570 tatcgtttcaattttatcggatgtccccgaagggac 20940535  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 8763031 - 8762982
Alignment:
Q  89 accatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8763031 accatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatc 8762982  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 7777910 - 7777985
Alignment:
Q  89 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 163  Q
    ||||||||||||||| ||| || ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  7777910 accatttctcgatttatgcttgccatccttacgccgggtgccatgctaatcttctctgtatcgttccaattttatc 7777985  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 7772302 - 7772377
Alignment:
Q  89 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 163  Q
    |||||||| |||| | ||| || ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||    
T  7772302 accatttcacgatgtatgcttgccatccttacgccgggtgccatgctaatcttctctgtatcgttccaattttatc 7772377  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 7792702 - 7792777
Alignment:
Q  89 accatttctcgatttgtgcgtgtcatccttgcgcaggg-gccatgctaatcttctctgtatcgttccaattttatc 163  Q
    ||||||||||||||| ||| || ||||||| ||  ||| |||||||||||||||||| ||||||||||||||||||    
T  7792702 accatttctcgatttatgcttgccatccttacgtcgggtgccatgctaatcttctctatatcgttccaattttatc 7792777  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 19261025 - 19260976
Alignment:
Q  134 taatcttctctgtatcgttccaattttatcggatgtccccgaagggacgt 183  Q
    ||||||| |||||||||||||||||| ||||| | |||||||||||||||    
T  19261025 taatcttttctgtatcgttccaatttaatcgggtttccccgaagggacgt 19260976  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 8058757 - 8058720
Alignment:
Q  144 tgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8058757 tgtatcgctccaattttatcggatgtccccgaagggac 8058720  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 17013919 - 17013884
Alignment:
Q  146 tatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17013919 tatcgttccaattttatcggatgtccctgaagggac 17013884  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 18352682 - 18352643
Alignment:
Q  138 cttctctgtatcgttccaattttatcggatgtccccgaag 177  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  18352682 cttctctgtatcattccaattttatcggatgttcccgaag 18352643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 29176661 - 29176699
Alignment:
Q  143 ctgtatcgttccaattttatcggatgtccccgaagggac 181  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  29176661 ctgtatcgttccaattttatcggatgttctcgaagggac 29176699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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