View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12915_low_24 (Length: 267)

Name: NF12915_low_24
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12915_low_24
NF12915_low_24
[»] chr7 (6 HSPs)
chr7 (17-114)||(14646184-14646281)
chr7 (17-114)||(14796467-14796564)
chr7 (17-114)||(15243459-15243556)
chr7 (169-267)||(14796314-14796412)
chr7 (169-267)||(15243306-15243404)
chr7 (169-267)||(14646336-14646434)
[»] chr1 (2 HSPs)
chr1 (169-264)||(26270424-26270519)
chr1 (52-114)||(26270307-26270369)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 14646184 - 14646281
Alignment:
Q  17 aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14646184 aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 14646281  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 14796564 - 14796467
Alignment:
Q  17 aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14796564 aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 14796467  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 15243556 - 15243459
Alignment:
Q  17 aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15243556 aaatacaacctttgaacaacacaacacaacactagtaagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 15243459  T

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Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 14796412 - 14796314
Alignment:
Q  169 gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca 267  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14796412 gactcaagcacctgggctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca 14796314  T

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Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 15243404 - 15243306
Alignment:
Q  169 gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca 267  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15243404 gactcaagcacctgggctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca 15243306  T

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Target: chr7; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 14646336 - 14646434
Alignment:
Q  169 gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcagcca 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14646336 gactcaagcacctggcctatttcttgtctgcattctttcccaaaatccttcccaaatttcttcaaaaactttgttgtcatctcacacccattgcagcca 14646434  T

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Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 26270424 - 26270519
Alignment:
Q  169 gactcaagcacctggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcag 264  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26270424 gactcaagcacttggcctatttcttgtccgcattctttcccaaaatccttcccaaatttcttcaaaaactctgtcgtcatctcacacccattgcag 26270519  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 26270307 - 26270369
Alignment:
Q  52 taagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgtacaaccag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26270307 taagctagtttgaaagcaactgcaaagaaaacccaggacattaacaatgccatgaacaaccag 26270369  T

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