View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_26 (Length: 246)
Name: NF12915_low_26
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38213645 - 38213876
Alignment:
| Q |
1 |
tatatagtgttctcaatataccgaaaactgataaggaagtgatacaaactacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aa |
99 |
Q |
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| T |
38213645 |
tatatagtgttctcaatataccgaaaactgataaggaagtggtacaaactacaaagaatgtgatttatttgatcacatgttatctaagatagacaccaaa |
38213744 |
T |
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| Q |
100 |
aatatatagaggaatatataaaataaaagaatcataacaaat-----taagatggctattatatgttcttcatcattgatctctcatcagaaccttggac |
194 |
Q |
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| T |
38213745 |
aaaatatagaggaatatataaaatcaaagaatcataacaaattaaaataagatggctattatatgttcttcatcattgatctctcatcagaaccttggac |
38213844 |
T |
|
| Q |
195 |
gcttacactcagcaggaataccttctgggaat |
226 |
Q |
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| T |
38213845 |
gcttacactcagcaggaataccttctgggaat |
38213876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 38217913 - 38218095
Alignment:
| Q |
50 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa---- |
144 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
38217913 |
tacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaata |
38218012 |
T |
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| Q |
145 |
-gatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaat |
226 |
Q |
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| T |
38218013 |
agatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaat |
38218095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 42993697 - 42993602
Alignment:
| Q |
50 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaattaa |
144 |
Q |
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||||||||||||||||||||| |||| |||||| ||| | ||||||| |||| ||| ||||||| ||| |||| |||||||||||| ||||||| |
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| T |
42993697 |
tacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaatacagaggaagatagtaaatcaaagaatcataataaattaa |
42993602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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