View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12915_low_28 (Length: 237)
Name: NF12915_low_28
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 7639488 - 7639276
Alignment:
| Q |
10 |
atgaaggaagaagatgaatagtatcctctgaaaacttaagacactagtacaacaaacataaatagtttgattattgtgatataaagaagtatccaatgaa |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639488 |
atgaaggaagaagctgaatagtatcctctgaaaacttaagacactagtacaacaaacataaatagtttgattattgtgatataaagaagtatccaatgaa |
7639389 |
T |
|
| Q |
110 |
aaaacagacagattattaaggcaacattgtcaattgaaatcatcttatacaaaaacaattttgaccaaatctcaagagaatattnnnnnnntatgaaaat |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7639388 |
aaaacatacagattattaaggcaacattgtcaattgaaatcatcctatacaaaaacaattttgaccaaatctcaagagaatattaaaaaaatatgaaaat |
7639289 |
T |
|
| Q |
210 |
cgtgggaagaaaa |
222 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7639288 |
cgtgggaagaaaa |
7639276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 7632792 - 7632702
Alignment:
| Q |
10 |
atgaaggaagaagatgaatagtatcctctgaaaacttaagacactagtacaacaaa---cataaatagtttgattattgtgatataaagaa |
97 |
Q |
| |
|
||||||||||| |||| | ||| |||| |||| ||| |||| ||||||| ||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
7632792 |
atgaaggaagatgatggagagtctcctttgaatactcaagatactagtagtacaaaaagcataaatagtttgatcattatgatataaagaa |
7632702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University