View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12915_low_30 (Length: 211)

Name: NF12915_low_30
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12915_low_30
NF12915_low_30
[»] chr2 (3 HSPs)
chr2 (1-193)||(42117509-42117722)
chr2 (30-87)||(25538273-25538330)
chr2 (49-100)||(30397280-30397331)
[»] chr3 (10 HSPs)
chr3 (14-100)||(31205130-31205216)
chr3 (28-88)||(27630503-27630563)
chr3 (19-84)||(34489658-34489723)
chr3 (13-79)||(34470021-34470087)
chr3 (13-100)||(24671397-24671483)
chr3 (28-80)||(34523126-34523178)
chr3 (13-84)||(4578944-4579014)
chr3 (123-172)||(4579085-4579137)
chr3 (108-176)||(34469900-34469971)
chr3 (136-172)||(24671290-24671326)
[»] chr7 (5 HSPs)
chr7 (24-99)||(5102951-5103026)
chr7 (19-100)||(8140335-8140416)
chr7 (13-99)||(16184010-16184095)
chr7 (123-172)||(16183902-16183954)
chr7 (123-172)||(2323557-2323608)
[»] chr1 (4 HSPs)
chr1 (8-100)||(46191079-46191170)
chr1 (13-84)||(4129967-4130037)
chr1 (116-172)||(46191218-46191277)
chr1 (123-172)||(4130093-4130145)
[»] scaffold0074 (3 HSPs)
scaffold0074 (13-100)||(27597-27683)
scaffold0074 (13-84)||(29403-29473)
scaffold0074 (136-172)||(27497-27533)
[»] chr4 (3 HSPs)
chr4 (13-84)||(10427133-10427203)
chr4 (123-172)||(10427274-10427326)
chr4 (19-93)||(42022865-42022938)
[»] chr6 (4 HSPs)
chr6 (13-100)||(18967737-18967823)
chr6 (123-172)||(18967871-18967923)
chr6 (20-73)||(6174631-6174684)
chr6 (1-64)||(23014953-23015014)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 42117509 - 42117722
Alignment:
Q  1 gcattgataagttgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42117509 gcattgataagttgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 42117608  T
Q  101 gacat---------------------ataatttcaatcatgcaatcaagtagtaacacaacaagaattagagcttgttgagagtgagatgaaatatagtt 179  Q
     ||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42117609 cacatataaatagcaagtttatttgcataatttcaatcatgcaatcaagtagtaacacaacaagaattagagcttgttgagagtgagatgaaatatagtt 42117708  T
Q  180 tctcctaggttagt 193  Q
    ||||||||||||||    
T  42117709 tctcctaggttagt 42117722  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 25538273 - 25538330
Alignment:
Q  30 acatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaa 87  Q
    |||||||||||||||||| | || ||||||||| || || ||||||||||||||||||    
T  25538273 acatgttgcacacttggtatattacatggaagataaatgacttgttgcatgtaagaaa 25538330  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 30397331 - 30397280
Alignment:
Q  49 ttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    |||| |||||||||||||| | |||||||||||||| ||| |||||||||||    
T  30397331 ttttacatggaagacaagtagtttgttgcatgtaaggaactatggcttacct 30397280  T

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Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 31205216 - 31205130
Alignment:
Q  14 gcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||| |||||||    
T  31205216 gcataagatgcaagtgacatgttgcacacttggtgtcttgcatggaagacaagtggcttgttgcatataaggaactatgacttacct 31205130  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 27630563 - 27630503
Alignment:
Q  28 tgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaac 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27630563 tgacatgttgtacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaac 27630503  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 34489723 - 34489658
Alignment:
Q  19 agatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaag 84  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  34489723 agatacaagtgacatgttgtacacttggttttttgcatggaagacaagtggcttgttgcatgtaag 34489658  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 34470087 - 34470021
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcat 79  Q
    ||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34470087 tgcatgagataccagtgacatgttgcacacttggtgttttgcatagaagacaagtggcttgttgcat 34470021  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 24671483 - 24671397
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    ||||| |||||||||||||| ||||||| ||||  |||| |||||||||||||||||||||||||||||||| ||| | |||||||||    
T  24671483 tgcatgagatgcaagtgacaagttgcactcttgaagttt-gcatggaagacaagtggcttgttgcatgtaaggaactaaggcttacct 24671397  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 34523178 - 34523126
Alignment:
Q  28 tgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatg 80  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  34523178 tgacatgttgtacacttggtgttttgcatggaagacaagtggcttattgcatg 34523126  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 4578944 - 4579014
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaag 84  Q
    ||||| |||||||||||||| ||| ||| ||||  |||| ||||||||||||||||||||||||||| ||||    
T  4578944 tgcatgagatgcaagtgacaagtttcactcttgaagttt-gcatggaagacaagtggcttgttgcatctaag 4579014  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 4579085 - 4579137
Alignment:
Q  123 atcaagtagtaacacaa---caagaattagagcttgttgagagtgagatgaaa 172  Q
    |||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  4579085 atcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaa 4579137  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 34469971 - 34469900
Alignment:
Q  108 aatttcaatcatgcaatcaagtagtaacacaacaagaa---ttagagcttgttgagagtgagatgaaatata 176  Q
    ||||||| |||| | |||||||||||||||||||| ||   |||||||||||||||||| |||  |||||||    
T  34469971 aatttcattcatccgatcaagtagtaacacaacaacaacaattagagcttgttgagagtaagagaaaatata 34469900  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24671326 - 24671290
Alignment:
Q  136 acaacaagaattagagcttgttgagagtgagatgaaa 172  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  24671326 acaacaagagttagagcttgttgagagtgagaggaaa 24671290  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 5103026 - 5102951
Alignment:
Q  24 caagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacc 99  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  5103026 caagtgacatgttacacatttggtgttttgcatgaaagacaagtggcttgttgcatgcaagaaacaatggtttacc 5102951  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 8140416 - 8140335
Alignment:
Q  19 agatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||| ||| ||| |||||||    
T  8140416 agatgcaagtgacatgttgcacacttggagttttgcatggaggacaagttgattgttgcatgtaaggaactatgacttacct 8140335  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 16184095 - 16184010
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacc 99  Q
    ||||| |||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| | ||||||||    
T  16184095 tgcatgagatgcaagtgacaagttgcactcttggagtttt-catggaagacaagtggcttgttgcatgtaaggaactaaggcttacc 16184010  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 16183954 - 16183902
Alignment:
Q  123 atcaagtagtaacacaacaa---gaattagagcttgttgagagtgagatgaaa 172  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||| ||||    
T  16183954 atcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaa 16183902  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 2323608 - 2323557
Alignment:
Q  123 atcaagtagtaacacaacaagaa--ttagagcttgttgagagtgagatgaaa 172  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||| ||||    
T  2323608 atcaagtagtaacacaacaataagattagagcttgttgagagtgagaggaaa 2323557  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 46191079 - 46191170
Alignment:
Q  8 taagttgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    |||| ||||| |||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| | |||||||||    
T  46191079 taagatgcatgagatgcaagtgacaagttgcactcttggagttt-gcatggaagacaagtggcttgttgcatgtaaggaactaaggcttacct 46191170  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 4129967 - 4130037
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaag 84  Q
    ||||| |||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  4129967 tgcatgagatgcaagtgacaagttgcactcttggagttt-gcatggaagacaagtggcttgttgcatgtaag 4130037  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 46191218 - 46191277
Alignment:
Q  116 tcatgcaatcaagtagtaacacaa---caagaattagagcttgttgagagtgagatgaaa 172  Q
    |||| |||||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  46191218 tcatccaatcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaa 46191277  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 4130093 - 4130145
Alignment:
Q  123 atcaagtagtaacacaa---caagaattagagcttgttgagagtgagatgaaa 172  Q
    |||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  4130093 atcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaa 4130145  T

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Target: scaffold0074 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 27683 - 27597
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    ||||| |||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| | |||||||||    
T  27683 tgcatgagatgcaagtgacaagttgcactcttggagttt-gcatggaagacaagtggcttgttgcatgtaaggaactaaggcttacct 27597  T

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Target: scaffold0074; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 29473 - 29403
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaag 84  Q
    ||||| |||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  29473 tgcatgagatgcaagtgacaagttgcactcttggagttt-gcatggaagacaagtggcttgttgcatgtaag 29403  T

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Target: scaffold0074; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 27533 - 27497
Alignment:
Q  136 acaacaagaattagagcttgttgagagtgagatgaaa 172  Q
    |||||||||||||||||||||||||||||||| ||||    
T  27533 acaacaagaattagagcttgttgagagtgagaggaaa 27497  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10427133 - 10427203
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaag 84  Q
    ||||| |||||||||||||| ||||||| ||||  |||| ||||||||||||||||||||||||||||||||    
T  10427133 tgcatgagatgcaagtgacaagttgcactcttgaagttt-gcatggaagacaagtggcttgttgcatgtaag 10427203  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 10427274 - 10427326
Alignment:
Q  123 atcaagtagtaacacaa---caagaattagagcttgttgagagtgagatgaaa 172  Q
    |||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  10427274 atcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaa 10427326  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 42022865 - 42022938
Alignment:
Q  19 agatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatgg 93  Q
    ||||||||  ||||| ||||||||||| ||| | || || |||||||||||||||||||||||||| ||| ||||    
T  42022865 agatgcaaacgacattttgcacacttg-tgtatagcttgaaagacaagtggcttgttgcatgtaaggaactatgg 42022938  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 18967737 - 18967823
Alignment:
Q  13 tgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttgttgcatgtaagaaacaatggcttacct 100  Q
    ||||| |||||||||| ||| ||||||| |||   |||| ||||||||||||| |||||||||||||||||| ||| | |||||||||    
T  18967737 tgcatgagatgcaagtaacaagttgcactcttaaagttt-gcatggaagacaaatggcttgttgcatgtaaggaactaaggcttacct 18967823  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 18967871 - 18967923
Alignment:
Q  123 atcaagtagtaacacaa---caagaattagagcttgttgagagtgagatgaaa 172  Q
    |||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  18967871 atcaagtagtaacacaacaacaagaattagagcttgttgagagtgagaggaaa 18967923  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 6174684 - 6174631
Alignment:
Q  20 gatgcaagtgacatgttgcacacttggtgttttgcatggaagacaagtggcttg 73  Q
    ||||| ||||||||||| ||| |||||||||||||||| || ||||||||||||    
T  6174684 gatgctagtgacatgtttcacccttggtgttttgcatgaaacacaagtggcttg 6174631  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23015014 - 23014953
Alignment:
Q  1 gcattgataagttgcattagatgcaagtgacatgttgcacacttggtgttttgcatggaagaca 64  Q
    ||||||| ||||||||  ||||||| || |||| |||||||||| ||||||| |||||||||||    
T  23015014 gcattgacaagttgca--agatgcatgtaacatattgcacacttcgtgtttttcatggaagaca 23014953  T

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