View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12915_low_4 (Length: 490)
Name: NF12915_low_4
Description: NF12915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12915_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 53514968 - 53514506
Alignment:
| Q |
18 |
catggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacgaaatattcagattgca |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514968 |
catggaaaattaaattatatgacaatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacgaaatattcagattgca |
53514869 |
T |
|
| Q |
118 |
ggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatcttaaactgttggaatctatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53514868 |
ggaaacttaaactttccgaaagactccagagtttgagtggagatctttctttttatattttttttaaatgagagagatcttaaactgttggaatctatat |
53514769 |
T |
|
| Q |
218 |
tgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcac |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514768 |
tgtatta----aaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcac |
53514673 |
T |
|
| Q |
318 |
ttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgnnnnnnnngtattggttccaataattgtagatcattttctttt |
417 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53514672 |
ttgttgtcgatggcgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgttttttttgtattggttccaataattgtagatcattttctttt |
53514573 |
T |
|
| Q |
418 |
tcatgtacattttcttgagaaatgtgtccagtggtaatgcattacttttgatatatcccctgtctgtg |
485 |
Q |
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| T |
53514572 |
tcatgtacattttcttgagaaatgtgtccagtggtaatgca-tacttttgatatatcccctgcctgtg |
53514506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 53511267 - 53510938
Alignment:
| Q |
18 |
catggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatacacgaaatattcagattgca |
117 |
Q |
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|||||||||||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
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| T |
53511267 |
catggaaaattaaactatacaaagatagaggtttttcatggtagttaatgataaaagaaaatctagtattcatattcatacatggaatattcagattgca |
53511168 |
T |
|
| Q |
118 |
ggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatcttaaactgttggaatctatat |
217 |
Q |
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| T |
53511167 |
ggaaacttgaactttctgaaagactccagagtttgagtggagatcttagtttt------------aaatgagagagatcttaaactgttggaatttatat |
53511080 |
T |
|
| Q |
218 |
tgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcac |
317 |
Q |
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||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
53511079 |
tgtatta----aaatgtccacttttcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgacaagatcgc |
53510984 |
T |
|
| Q |
318 |
ttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgc |
363 |
Q |
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||||||| ||||| | |||||| ||| || ||||||||||||||| |
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| T |
53510983 |
ttgttgttgatggcttgactggaaagggtagagaaagcaggtttgc |
53510938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 234 - 374
Target Start/End: Complemental strand, 53525187 - 53525047
Alignment:
| Q |
234 |
tccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcacttgttgtcgatggtgt |
333 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |
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| T |
53525187 |
tccattctgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgcaaaggtcacttgttgtcgatggcgt |
53525088 |
T |
|
| Q |
334 |
aactggagaggttaaagaaagcaggtttgcctatgcttgtg |
374 |
Q |
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||| ||| ||| || | || |||||||||||||||||||| |
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| T |
53525087 |
aaccggacagggtatactaaacaggtttgcctatgcttgtg |
53525047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 198 - 478
Target Start/End: Complemental strand, 53548837 - 53548554
Alignment:
| Q |
198 |
taaactgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaa |
297 |
Q |
| |
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|||||||||||||| |||||||||||| ||| || ||| | |||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53548837 |
taaactgttggaatttatattgtatta----aaatgtcaattcttcctaccattgtgaacagtccaaagaagaatgtgagcatttgatcaatctggccaa |
53548742 |
T |
|
| Q |
298 |
gcctttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgnnnnnnnngtattggttccaata |
397 |
Q |
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||||||| |||||| |||| ||| |||||| | |||||| || || ||||||||||||||||| |||||||| |||| |||||||||| |
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| T |
53548741 |
gcctttcttggcaaaatcaagtgtcgtcgatagcaagactggaaagagtacagaaagcaggtttgcctttgcttgtg-tttttttgtatcggttccaata |
53548643 |
T |
|
| Q |
398 |
attgtagatcattttcttttt------catgtacattttcttgagaaa--tgtgtccagtggtaatgcattacttttgatatatcccct |
478 |
Q |
| |
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||||||||||||||| ||||| ||| || ||||||||||| | ||||| ||||||||||||||||| | |||||||||||| |
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| T |
53548642 |
attgtagatcatttttttttttctttccataaaccttttcttgagagactagtgtctagtggtaatgcattactctagatatatcccct |
53548554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 20197384 - 20197301
Alignment:
| Q |
234 |
tccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcac |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||| |||||||| |
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| T |
20197384 |
tccattatgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaaacttggcaagccttacttggaaagatcac |
20197301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 53510929 - 53510861
Alignment:
| Q |
414 |
tttttcatgtacattttcttgaga-aat-gtgtcc-agtggtaatgcattacttttgatatatcccctg |
479 |
Q |
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|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||| |
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| T |
53510929 |
tttttcatgtacattttcttgagagaatagtgtcttagtggtaatgcattacttttaatatatcccctg |
53510861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 16608400 - 16608492
Alignment:
| Q |
202 |
ctgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
298 |
Q |
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|||||||||| |||||||||||| ||| || ||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
16608400 |
ctgttggaatttatattgtatta----aaatgtctattatgcctatcattttgtacaatcaaaataagaatgtgagcatttgatcaatcttgccaag |
16608492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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