View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12916_high_1 (Length: 358)
Name: NF12916_high_1
Description: NF12916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12916_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 15301889 - 15302235
Alignment:
| Q |
1 |
aggataagtggttgccctttgtttgtaacgaaaccacaattcgaaaaaagacaccgaaaacattaaatgtgattccaaattcatcctgcgtaacattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15301889 |
aggataagtggttgccctttgtttgtaacgaaacaacaattcgaaaaaagacaccgaaaacattaaatgtgattccaaattcatcctgcgtaacattatt |
15301988 |
T |
|
| Q |
101 |
gaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagttggcatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15301989 |
gaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagttggcatatt |
15302088 |
T |
|
| Q |
201 |
tgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggtataggtcctgaaaaagagttgttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15302089 |
tgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggtataggtcctgaaaaagagttgttct |
15302188 |
T |
|
| Q |
301 |
gaagattaagcatcaagagttttcggcaatttttcattgacacaggt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15302189 |
gaagattaagcatcaagagttttcggcaatttttcattgacacaggt |
15302235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 15482258 - 15482604
Alignment:
| Q |
1 |
aggataagtggttgccctttgtttgtaacgaaaccacaattcgaaaaaagacaccgaaaacattaaatgtgattccaaattcatcctgcgtaacattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15482258 |
aggataagtggttgccctttgtttgtaacgaaacaacaattcgaaaaaagacaccgaaaacattaaatgtgattccaaattcatcctgcgtaacattatt |
15482357 |
T |
|
| Q |
101 |
gaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagttggcatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15482358 |
gaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagttggcatatt |
15482457 |
T |
|
| Q |
201 |
tgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggtataggtcctgaaaaagagttgttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15482458 |
tgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggtataggtcctgaaaaagagttgttct |
15482557 |
T |
|
| Q |
301 |
gaagattaagcatcaagagttttcggcaatttttcattgacacaggt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15482558 |
gaagattaagcatcaagagttttcggcaatttttcattgacacaggt |
15482604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 50 - 277
Target Start/End: Original strand, 15445685 - 15445912
Alignment:
| Q |
50 |
gacaccgaaaacattaaatgtgattccaaattcatcctgcgtaacattattgaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggtt |
149 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||| | ||||||||||||||| ||||||| |||||||| ||| || |||||||| |||| ||| |
|
|
| T |
15445685 |
gacaccgaaaacattatatgaaatatcaaattcatttagtgtaacattattgaaagtcatggaggtgatatttggtaggcactgaggtatttttccagtt |
15445784 |
T |
|
| Q |
150 |
aatctattatttgagagatctaaaacaaaaagagaggatagttggcatatttgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactt |
249 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15445785 |
aatctattatttgagagatccaaaacaaagagagaggatagttgacatatttgtaaaggaatgtcaccactaaattcatttgatctcaattgaagaactt |
15445884 |
T |
|
| Q |
250 |
tcacaccctttccaatccaatttggtat |
277 |
Q |
| |
|
||| | |||||||||||||||||||||| |
|
|
| T |
15445885 |
tcatatcctttccaatccaatttggtat |
15445912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 92 - 288
Target Start/End: Original strand, 15283477 - 15283673
Alignment:
| Q |
92 |
aacattattgaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagt |
191 |
Q |
| |
|
|||||| |||||||||||||| |||||| | ||| ||| ||||||| ||||| ||||||||||||| ||||||||| |||| ||| |||||||||||| |
|
|
| T |
15283477 |
aacatttttgaaaatcatggaggtgatacttggtagacagcgaggtattgttcctgttaatctattatatgagagatccaaaagaaatagagaggatagt |
15283576 |
T |
|
| Q |
192 |
tggcatatttgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggtataggtcctgaaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
15283577 |
tggcatatttgtaaaggaatatcaccactaaattcatttactctcaattgaagaactttcatatcctttccaatccaatttggtatatttcctgaaa |
15283673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 92 - 288
Target Start/End: Original strand, 15463846 - 15464042
Alignment:
| Q |
92 |
aacattattgaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagt |
191 |
Q |
| |
|
|||||| |||||||||||||| |||||| | ||| ||| ||||||| ||||| ||||||||||||| ||||||||| |||| ||| |||||||||||| |
|
|
| T |
15463846 |
aacatttttgaaaatcatggaggtgatacttggtagacagcgaggtattgttcctgttaatctattatatgagagatccaaaagaaatagagaggatagt |
15463945 |
T |
|
| Q |
192 |
tggcatatttgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggtataggtcctgaaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
15463946 |
tggcatatttgtaaaggaatatcaccactaaattcatttactctcaattgaagaactttcatatcctttccaatccaatttggtatatttcctgaaa |
15464042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 278
Target Start/End: Original strand, 15312830 - 15313031
Alignment:
| Q |
77 |
aaattcatcctgcgtaacattattgaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaaca |
176 |
Q |
| |
|
|||||||| || ||||||| ||| ||| ||||||| |||||||| || || |||||||| | ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
15312830 |
aaattcattttgtgtaacatcattaaaagtcatggaagtgatatttgataggcactgaggtattgctccagttaatctattatttgagagatccaaaaca |
15312929 |
T |
|
| Q |
177 |
aaaagagaggatagttggcatatttgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggta |
276 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || | | | ||||||||||||||||| |
|
|
| T |
15312930 |
aagagagaggatagttggcatatttgtgaaggaatatcaccactaaattcatttgatctcaattgaagaacttccatatcttgtccaatccaatttggta |
15313029 |
T |
|
| Q |
277 |
ta |
278 |
Q |
| |
|
|| |
|
|
| T |
15313030 |
ta |
15313031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 278
Target Start/End: Original strand, 15493199 - 15493400
Alignment:
| Q |
77 |
aaattcatcctgcgtaacattattgaaaatcatggatgtgatattatgtatacaatgaggtatcgttccggttaatctattatttgagagatctaaaaca |
176 |
Q |
| |
|
|||||||| || ||||||| ||| ||| ||||||| |||||||| || || |||||||| | ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
15493199 |
aaattcattttgtgtaacatcattaaaagtcatggaagtgatatttgataggcactgaggtattgctccagttaatctattatttgagagatccaaaaca |
15493298 |
T |
|
| Q |
177 |
aaaagagaggatagttggcatatttgtaaaggaatatcaccactaaattcatttgaactcaattgaagaactttcacaccctttccaatccaatttggta |
276 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || | | | ||||||||||||||||| |
|
|
| T |
15493299 |
aagagagaggatagttggcatatttgtgaaggaatatcaccactaaattcatttgatctcaattgaagaacttccatatcttgtccaatccaatttggta |
15493398 |
T |
|
| Q |
277 |
ta |
278 |
Q |
| |
|
|| |
|
|
| T |
15493399 |
ta |
15493400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 277
Target Start/End: Original strand, 18051514 - 18051656
Alignment:
| Q |
135 |
ggtatcgttccggttaatctattatttgagagatctaaaacaaaaagagaggatagttggcatatttgtaaaggaatatcaccactaaattcatttgaac |
234 |
Q |
| |
|
||||| ||||| | |||| ||||||| | ||||| ||||| | ||||| || |||||||||||||||| ||||||| |||||| |||||||||||| | |
|
|
| T |
18051514 |
ggtattgttcctgataatttattattcgcaagatccaaaactatgagagaagaaagttggcatatttgtagaggaataacaccacgaaattcatttgatc |
18051613 |
T |
|
| Q |
235 |
tcaattgaagaactttcacaccctttccaatccaatttggtat |
277 |
Q |
| |
|
|||| ||| ||||||| | | |||||||||||||||||| |
|
|
| T |
18051614 |
tcaacctgagagctttcacgtcatgtccaatccaatttggtat |
18051656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University