View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12916_low_2 (Length: 283)

Name: NF12916_low_2
Description: NF12916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12916_low_2
NF12916_low_2
[»] scaffold1431 (1 HSPs)
scaffold1431 (1-85)||(93-177)
[»] chr8 (23 HSPs)
chr8 (1-77)||(7146920-7146996)
chr8 (1-92)||(2540125-2540216)
chr8 (1-84)||(3585451-3585534)
chr8 (1-84)||(43275591-43275674)
chr8 (1-86)||(40058497-40058582)
chr8 (1-85)||(11646519-11646603)
chr8 (1-85)||(40918923-40919007)
chr8 (1-84)||(11174417-11174500)
chr8 (1-84)||(27034997-27035080)
chr8 (1-84)||(37345571-37345654)
chr8 (1-77)||(30999715-30999791)
chr8 (1-84)||(36068080-36068163)
chr8 (31-84)||(40486453-40486506)
chr8 (1-84)||(20546481-20546564)
chr8 (31-85)||(8697898-8697952)
chr8 (31-85)||(41307961-41308015)
chr8 (31-84)||(45278701-45278754)
chr8 (31-78)||(10646598-10646645)
chr8 (43-86)||(41305760-41305803)
chr8 (1-78)||(28562427-28562504)
chr8 (43-78)||(28567925-28567960)
chr8 (43-78)||(28575518-28575553)
chr8 (56-84)||(40494384-40494412)
[»] chr3 (22 HSPs)
chr3 (1-85)||(43750136-43750220)
chr3 (1-85)||(29375137-29375221)
chr3 (1-84)||(36881282-36881365)
chr3 (1-91)||(3383069-3383159)
chr3 (1-85)||(13364842-13364926)
chr3 (1-85)||(19241862-19241946)
chr3 (1-84)||(198855-198938)
chr3 (6-84)||(27707363-27707441)
chr3 (1-77)||(32835150-32835226)
chr3 (1-84)||(23088125-23088208)
chr3 (1-84)||(46694304-46694387)
chr3 (1-69)||(13702784-13702852)
chr3 (31-85)||(12094581-12094635)
chr3 (31-85)||(44277455-44277509)
chr3 (31-84)||(19911509-19911562)
chr3 (1-86)||(37293435-37293520)
chr3 (31-84)||(38805245-38805298)
chr3 (43-84)||(44276775-44276816)
chr3 (43-86)||(19912174-19912217)
chr3 (43-86)||(38806341-38806384)
chr3 (1-67)||(48820446-48820512)
chr3 (56-84)||(21797556-21797584)
[»] chr6 (15 HSPs)
chr6 (1-84)||(8626482-8626565)
chr6 (1-85)||(1605578-1605662)
chr6 (1-85)||(13757207-13757291)
chr6 (1-85)||(29260191-29260275)
chr6 (1-86)||(15064888-15064973)
chr6 (1-85)||(7761300-7761384)
chr6 (1-77)||(30734677-30734753)
chr6 (1-80)||(30734802-30734881)
chr6 (1-69)||(8235639-8235707)
chr6 (1-69)||(31559930-31559998)
chr6 (21-85)||(17942442-17942506)
chr6 (31-86)||(19996715-19996770)
chr6 (32-84)||(4129435-4129487)
chr6 (43-85)||(19996321-19996363)
chr6 (56-84)||(22054772-22054800)
[»] chr2 (9 HSPs)
chr2 (1-84)||(1102503-1102586)
chr2 (1-87)||(3518905-3518991)
chr2 (1-85)||(12969933-12970017)
chr2 (1-84)||(39938170-39938253)
chr2 (1-83)||(23366790-23366872)
chr2 (1-84)||(37673931-37674014)
chr2 (31-84)||(34224378-34224431)
chr2 (1-56)||(1646317-1646372)
chr2 (56-84)||(44365157-44365185)
[»] chr1 (23 HSPs)
chr1 (1-84)||(24772099-24772182)
chr1 (1-84)||(284333-284416)
chr1 (1-84)||(23045473-23045556)
chr1 (1-86)||(46771635-46771720)
chr1 (1-84)||(321626-321709)
chr1 (4-83)||(27211161-27211240)
chr1 (1-85)||(40783851-40783935)
chr1 (1-73)||(23526251-23526323)
chr1 (1-77)||(47038044-47038120)
chr1 (31-87)||(9588667-9588723)
chr1 (31-85)||(3943059-3943113)
chr1 (1-64)||(33082765-33082828)
chr1 (31-77)||(13984991-13985037)
chr1 (31-84)||(41959078-41959131)
chr1 (43-86)||(44227846-44227889)
chr1 (3-69)||(52037316-52037382)
chr1 (31-76)||(1168369-1168414)
chr1 (1-77)||(1749314-1749390)
chr1 (43-86)||(41959809-41959852)
chr1 (31-78)||(44228228-44228275)
chr1 (43-84)||(3943763-3943804)
chr1 (52-85)||(10845480-10845513)
chr1 (18-70)||(40564241-40564293)
[»] chr7 (11 HSPs)
chr7 (1-86)||(27813809-27813894)
chr7 (1-85)||(10981507-10981591)
chr7 (1-78)||(36453318-36453395)
chr7 (1-77)||(25614545-25614621)
chr7 (1-77)||(40348967-40349043)
chr7 (1-84)||(47110451-47110534)
chr7 (31-86)||(25060133-25060188)
chr7 (31-85)||(2911548-2911602)
chr7 (43-85)||(2910858-2910900)
chr7 (56-86)||(25566781-25566811)
chr7 (43-84)||(25059450-25059491)
[»] chr4 (18 HSPs)
chr4 (1-85)||(21310424-21310508)
chr4 (1-85)||(25704650-25704734)
chr4 (1-85)||(40122679-40122763)
chr4 (3-85)||(14261043-14261125)
chr4 (1-86)||(21661729-21661814)
chr4 (1-86)||(21670493-21670578)
chr4 (1-86)||(24706441-24706526)
chr4 (4-84)||(20249209-20249289)
chr4 (1-85)||(12071560-12071644)
chr4 (1-77)||(22321461-22321537)
chr4 (1-77)||(44568844-44568920)
chr4 (1-84)||(34324776-34324860)
chr4 (1-78)||(31892244-31892321)
chr4 (1-86)||(50767862-50767947)
chr4 (31-69)||(19361662-19361700)
chr4 (1-54)||(1988065-1988118)
chr4 (43-84)||(26676802-26676843)
chr4 (1-33)||(3929595-3929627)
[»] chr5 (12 HSPs)
chr5 (1-84)||(12807047-12807130)
chr5 (1-84)||(30720686-30720769)
chr5 (1-84)||(25773649-25773732)
chr5 (3-73)||(7277618-7277688)
chr5 (1-86)||(10285251-10285336)
chr5 (1-77)||(36561293-36561369)
chr5 (1-85)||(37900818-37900902)
chr5 (1-77)||(40886804-40886880)
chr5 (6-85)||(16983257-16983336)
chr5 (35-84)||(15305216-15305265)
chr5 (3-38)||(25683424-25683459)
chr5 (1-36)||(30403156-30403191)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-85)||(45453-45537)
[»] scaffold0257 (1 HSPs)
scaffold0257 (31-84)||(23467-23520)
[»] scaffold0062 (1 HSPs)
scaffold0062 (3-69)||(459-525)
[»] scaffold1770 (1 HSPs)
scaffold1770 (32-84)||(170-222)


Alignment Details
Target: scaffold1431 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 93 - 177
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  93 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagagagtat 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7146996 - 7146920
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7146996 tcatcaaaaataacaaaatttatttggtttcttggttactgcaatttcttcaaaatggacatgtattttgaaacgga 7146920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2540125 - 2540216
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtattcatttt 92  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||||  |||||| |||||    
T  2540125 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggaggaagtattaatttt 2540216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3585534 - 3585451
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  3585534 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43275591 - 43275674
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  43275591 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40058497 - 40058582
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| | |||||||||||||||||||||||||| |||||||    
T  40058497 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccgaaatggacatgtattttgaaacggagggagtatt 40058582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11646519 - 11646603
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||| || ||||||    
T  11646519 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacgaagggagtat 11646603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40918923 - 40919007
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  40918923 tcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 40919007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11174417 - 11174500
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||||||||||||| |||||    
T  11174417 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 27035080 - 27034997
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  27035080 tcatcaaaaataaaaaaaattatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37345654 - 37345571
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||| ||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||    
T  37345654 tcattaaaaataacaaaatttatttggtttcttggttggtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30999715 - 30999791
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||||||||||    
T  30999715 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36068163 - 36068080
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||| ||||||||||||||||||| ||||| ||||||| | ||||| || |||||||||||||||||||||||||||| |||||    
T  36068163 tcattaaaaataacaaaatttatttggttttttggttagtacaattcctccaaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 40486453 - 40486506
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  40486453 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20546481 - 20546564
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||||||||||||||||||   ||||||| ||  | ||||||||||||||||||||| |||||||||| |||| |||||    
T  20546481 tcatcaaaaataacaaaatttatttaatttcttgattgttgcaatttcttcaaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 8697898 - 8697952
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  8697898 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 8697952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 41307961 - 41308015
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  41307961 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 41308015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 45278701 - 45278754
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  45278701 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 10646645 - 10646598
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggag 78  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  10646645 cttggttactgcaatttctccaaaatggacatgtattttgaaacggag 10646598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 41305803 - 41305760
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagtatt 41305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28562504 - 28562427
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggag 78  Q
    ||||||||||| |||| ||||||| | || ||||||   |  ||||||||||||||||||| ||||||||||||||||    
T  28562504 tcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattttgaaacggag 28562427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 28567960 - 28567925
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggag 78  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28567960 aatttcttcaaaatggacaagtattttgaaacggag 28567925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 28575553 - 28575518
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggag 78  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28575553 aatttcttcaaaatggacaagtattttgaaacggag 28575518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 40494412 - 40494384
Alignment:
Q  56 tggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||||||||    
T  40494412 tggacatgtattttgaaacggagagagta 40494384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43750220 - 43750136
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  43750220 tcatcaaaaataacaaaatttatttggtttcttggttactccaatttctccaaaatggacatgtattttgaaacgaagggagtat 43750136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29375221 - 29375137
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  29375221 tcatcaaaaataagaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 29375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36881365 - 36881282
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  36881365 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3383159 - 3383069
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtattcattt 91  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||  ||||||| ||||    
T  3383159 tcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatatattttgaaacggaaggagtattaattt 3383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13364926 - 13364842
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||||||||||||| ||||||    
T  13364926 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 13364842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19241862 - 19241946
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||  |||||||||||||||||||||||||||| ||||||    
T  19241862 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcaccaaaatggacatgtattttgaaacggagggagtat 19241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 198938 - 198855
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||| | | |||||||| |||||||||||||||||||||||||||| |||||    
T  198938 tcatcaaaaataacaaaatttatttggtttcttggtcagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 27707363 - 27707441
Alignment:
Q  6 aaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||    
T  27707363 aaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32835150 - 32835226
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  32835150 tcatcaaaaataacaaaatttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23088125 - 23088208
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||| ||||||||||| ||| |||||    
T  23088125 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaaaatagacatatattttgaaacagagggagta 23088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 46694304 - 46694387
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||| ||| | |||||||| ||||| |||||||||||||||||||||| |||||    
T  46694304 tcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctccaaaaaggacatgtattttgaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13702852 - 13702784
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtatttt 69  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||| | ||||||||||    
T  13702852 tcatcaaaaatatcaaaatttatttggtttcttggttactgcaatttctccaaaataggcatgtatttt 13702784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 12094635 - 12094581
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  12094635 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 12094581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 44277455 - 44277509
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||    
T  44277455 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagtat 44277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 19911562 - 19911509
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||| |||||    
T  19911562 cttggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagta 19911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37293520 - 37293435
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    ||||||||||| |||| ||||||| | || ||||||   |  ||||||||||||||||||| ||||| |||||||||| |||||||    
T  37293520 tcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattgtgaaacggagggagtatt 37293435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 38805298 - 38805245
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||| ||||||||  |||||||||||||||||| |||||||| |||||    
T  38805298 cttggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 44276816 - 44276775
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 19912174 - 19912217
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagtatt 19912217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 38806341 - 38806384
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagtatt 38806384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48820446 - 48820512
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtatt 67  Q
    |||||||||||||||||||||||| ||||| |||| |||   ||||||| ||||||  |||||||||    
T  48820446 tcatcaaaaataacaaaatttatttggtttattggataccgtaatttctccaaaataaacatgtatt 48820512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 21797584 - 21797556
Alignment:
Q  56 tggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||||||||    
T  21797584 tggacatgtattttgaaacggagagagta 21797556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8626565 - 8626482
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  8626565 tcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttcttcaaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 1605662 - 1605578
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  1605662 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 1605578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13757291 - 13757207
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||    
T  13757291 tcatcaaaaataacaaaatttatttggtttcttggttagtgtaatttctccaaaatggacatgtattttgaaacggagagagtat 13757207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29260275 - 29260191
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  29260275 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 29260191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 15064888 - 15064973
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||||||||||||||||| |||||||||||| || ||||||||  ||||||||||||||||||||||||||| |||||||    
T  15064888 tcatcaaaaataacaaaatttatttggtttcttggttgctgcaatttctctaaaatggacatgtattttgaaacggagggagtatt 15064973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7761384 - 7761300
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    ||||||||||||||||||||||||  |||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  7761384 tcatcaaaaataacaaaatttatttagtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 7761300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30734677 - 30734753
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  30734677 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30734802 - 30734881
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagag 80  Q
    |||||||||||||||||||||||| | ||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  30734802 tcatcaaaaataacaaaatttatttgatttttttgttactgcaatttcttcaaaatggacatgtattttgaaacggagag 30734881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8235707 - 8235639
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtatttt 69  Q
    |||| |||||||||||| ||||||  |||||||||||||| |||||||||||||||| |||||||||||    
T  8235707 tcataaaaaataacaaattttatttcgtttcttggttactgcaatttcttcaaaatgtacatgtatttt 8235639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31559930 - 31559998
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtatttt 69  Q
    |||||||||||||||||||||||| | ||| ||||||| | |||||||| |||||||||||||||||||    
T  31559930 tcatcaaaaataacaaaatttatttgattttttggttaatgcaatttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 17942506 - 17942442
Alignment:
Q  21 tattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||||||||||| || ||||||    
T  17942506 tatttggtttcttggttactgcaatttctcaaaaatggacatgtattttgaaacgaagggagtat 17942442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 19996715 - 19996770
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||    
T  19996715 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagtatt 19996770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 4129487 - 4129435
Alignment:
Q  32 ttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||| |||||||| |||| |||| |||||||||||||||||| |||||    
T  4129487 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 4129435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 19996363 - 19996321
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||  ||||||||||||||||||||||||||| ||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagtat 19996321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 22054800 - 22054772
Alignment:
Q  56 tggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||||||||    
T  22054800 tggacatgtattttgaaacggagagagta 22054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1102586 - 1102503
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  1102586 tcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3518991 - 3518905
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtattc 87  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||    
T  3518991 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtattc 3518905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12969933 - 12970017
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  12969933 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 12970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39938253 - 39938170
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||| ||||||||||||||||||| |||||    
T  39938253 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 23366872 - 23366790
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagt 83  Q
    |||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||    
T  23366872 tcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37673931 - 37674014
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| ||||||| |||||||||||||||||||| |||||    
T  37673931 tcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 34224378 - 34224431
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  34224378 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1646372 - 1646317
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaat 56  Q
    ||||||||||||||||||||||||  ||||||||||| || |||||||| ||||||    
T  1646372 tcatcaaaaataacaaaatttatttagtttcttggttgctgcaatttctccaaaat 1646317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 44365185 - 44365157
Alignment:
Q  56 tggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||||||||    
T  44365185 tggacatgtattttgaaacggagagagta 44365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 24772099 - 24772182
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  24772099 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 284416 - 284333
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  284416 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23045473 - 23045556
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  23045473 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46771720 - 46771635
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    ||||||||||||||||||||||||   ||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  46771720 tcatcaaaaataacaaaatttatttaatttcttggttactgcaatttctccaaaatggacatgtattttgaaacggatagagtatt 46771635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 321709 - 321626
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||| |||||||||||||||||||| |||||    
T  321709 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 27211161 - 27211240
Alignment:
Q  4 tcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagt 83  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||    
T  27211161 tcaaaaataacaaaatttatttggtttcttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40783851 - 40783935
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| ||||||| |||||||||||||||||||| ||||||    
T  40783851 tcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 40783935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23526323 - 23526251
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaa 73  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||| |||||||||||||||    
T  23526323 tcatcaaaaataacaaaatttatttggtttcttgattactgcaatttctccaaaatgaacatgtattttgaaa 23526251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47038044 - 47038120
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| | |||||| |||| | |||||||| |||||||||||||||||||||||||||    
T  47038044 tcatcaaaaataacaaaatttatttgatttcttagttagtacaatttctccaaaatggacatgtattttgaaacgga 47038120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 9588723 - 9588667
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtattc 87  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||    
T  9588723 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtattc 9588667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 3943113 - 3943059
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  3943113 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 3943059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33082828 - 33082765
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgt 64  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| |||||| |||||||    
T  33082828 tcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatagacatgt 33082765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 13984991 - 13985037
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  13984991 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 13985037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 41959131 - 41959078
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  41959131 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 44227889 - 44227846
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagtatt 44227846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 52037316 - 52037382
Alignment:
Q  3 atcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtatttt 69  Q
    ||||||||||| |||||||||| ||||| |||| || | ||||||||  ||||||||||||||||||    
T  52037316 atcaaaaataataaaatttatttggttttttggataatgcaatttctctaaaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 1168414 - 1168369
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacgg 76  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||    
T  1168414 cttggttactgcaatttcttcaaaaacgacatgtattttgaaacgg 1168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1749390 - 1749314
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| | ||||||| |||||   |||| ||  ||||||| ||||||||| |||||||    
T  1749390 tcatcaaaaataacaaaatttatttgatttcttgattactgtgattttttttaaatggaaatgtattttaaaacgga 1749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 41959809 - 41959852
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||  ||||||||||||||||||||||||||| |||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagtatt 41959852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 44228228 - 44228275
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggag 78  Q
    |||||||||  |||||||| ||||||||||||||||||||||| ||||    
T  44228228 cttggttacagcaatttctccaaaatggacatgtattttgaaatggag 44228275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||  ||||||||||||||||||||||||||| |||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 10845513 - 10845480
Alignment:
Q  52 aaaatggacatgtattttgaaacggagagagtat 85  Q
    ||||||||||||||||||||||||||| ||||||    
T  10845513 aaaatggacatgtattttgaaacggagtgagtat 10845480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 40564241 - 40564293
Alignment:
Q  18 atttattgggtttcttggttactccaatttcttcaaaatggacatgtattttg 70  Q
    ||||||| ||||||||||||||| | |||| | |||||||||||| |||||||    
T  40564241 atttatttggtttcttggttactgcgatttttccaaaatggacatatattttg 40564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27813894 - 27813809
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||    
T  27813894 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtatt 27813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10981591 - 10981507
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  10981591 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 10981507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36453318 - 36453395
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggag 78  Q
    ||||||||||||| |||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  36453318 tcatcaaaaataataaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggag 36453395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25614545 - 25614621
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| ||||| ||||||| | |||||||| |||||||||||||||||||||||||||    
T  25614545 tcatcaaaaataacaaaatttatttggttttttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 25614621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40349043 - 40348967
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  40349043 tcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 40348967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 47110534 - 47110451
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||||||||||||||||||  |||||||||||| | |||||||| ||||||||||||||||||||||| |||| |||||    
T  47110534 tcatcaaaaataacaaaatttattttgtttcttggttagtgcaatttctccaaaatggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 25060133 - 25060188
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  25060133 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtatt 25060188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 2911548 - 2911602
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||    
T  2911548 cttggttactgcaatttctccaaaatggacatgtattttgaaatggagggagtat 2911602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 2910900 - 2910858
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagtat 2910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 25566781 - 25566811
Alignment:
Q  56 tggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||||||||||||||||||||||||    
T  25566781 tggacatgtattttgaaacggagagagtatt 25566811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 25059491 - 25059450
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||  |||||||||||||||||||||||||||| ||||    
T  25059491 aatttctctaaaatggacatgtattttgaaacggagaaagta 25059450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 21310508 - 21310424
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  21310508 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 21310424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25704734 - 25704650
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  25704734 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 25704650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40122679 - 40122763
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||    
T  40122679 tcatcaaaaataacaaaatttatttggttttttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 40122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 14261125 - 14261043
Alignment:
Q  3 atcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  14261125 atcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 14261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 21661729 - 21661814
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||    
T  21661729 tcatcaaaaataataaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagtatt 21661814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 21670493 - 21670578
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||    
T  21670493 tcatcaaaaataaaaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaagggagggagtatt 21670578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 24706441 - 24706526
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||  |||||||    
T  24706441 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggatggagtatt 24706526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 20249209 - 20249289
Alignment:
Q  4 tcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||||||||||||||| ||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||    
T  20249209 tcaaaaataacaaaatttatttggtttcttggttaatacaatttatccaaaatggacatgtattttgaaacggagagagta 20249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 12071644 - 12071560
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    ||||||||||||||||||||||||  |||| ||||||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  12071644 tcatcaaaaataacaaaatttatttagtttattggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagtat 12071560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22321461 - 22321537
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||| ||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  22321461 tcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacgga 22321537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44568920 - 44568844
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||| ||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  44568920 tcataaaaaataacaaaatttatttggttttttggttagtgcaatttcttcaaaatggacatgtattttgaaacgga 44568844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 34324776 - 34324860
Alignment:
Q  1 tcatcaaaaataacaaaattta-ttgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||| ||  |||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  34324776 tcatcaaaaataacaaaatttaatttagtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31892321 - 31892244
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggag 78  Q
    ||||||||||||| |||||||||| | ||||||||||||| ||||||||| |||||| ||||||||||||| ||||||    
T  31892321 tcatcaaaaataataaaatttatttgatttcttggttactgcaatttctttaaaatgaacatgtattttgatacggag 31892244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 50767947 - 50767862
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||  |||||| | |||||||||||||||||  |||||||    
T  50767947 tcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctctaaaatgaatatgtattttgaaacggaatgagtatt 50767862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 19361700 - 19361662
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtatttt 69  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  19361700 cttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1988118 - 1988065
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaa 54  Q
    ||||||||||||| |||||||||| | |||||| |||||| |||||||| ||||    
T  1988118 tcatcaaaaataataaaatttatttgatttcttagttactgcaatttctccaaa 1988065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 26676802 - 26676843
Alignment:
Q  43 aatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    ||||||||||||||||| | ||||| ||||||||||||||||    
T  26676802 aatttcttcaaaatggataagtattgtgaaacggagagagta 26676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3929627 - 3929595
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttctt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  3929627 tcatcaaaaataacaaaatttattggttttctt 3929595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 12807047 - 12807130
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  12807047 tcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctccaaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30720686 - 30720769
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  30720686 tcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25773732 - 25773649
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||    
T  25773732 tcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 7277618 - 7277688
Alignment:
Q  3 atcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaa 73  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  7277618 atcaaaaataacaaaatttatttggtttattggttactccaatttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 10285251 - 10285336
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtatt 86  Q
    ||||||||||||||||||||||||  |||||||||||| | |||||||| |||||| ||||| ||||||||||||||| |||||||    
T  10285251 tcatcaaaaataacaaaatttatttagtttcttggttaatgcaatttctccaaaatagacatctattttgaaacggagggagtatt 10285336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36561293 - 36561369
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||| |  ||||||||||||||||||||||||||    
T  36561293 tcatcaaaaataacaaaatttatttggtttcttgattactgcaatttttctaaaatggacatgtattttgaaacgga 36561369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37900818 - 37900902
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||| |||||||||||  |||||||||||||| |||||||| |||||||||  ||||||||||||||||| ||||||    
T  37900818 tcatcaaaaatatcaaaatttatttagtttcttggttactgcaatttctccaaaatggatgtgtattttgaaacggagggagtat 37900902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40886804 - 40886880
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacgga 77  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||||| ||||||| |||||||||||||||||||    
T  40886804 tcatcaaaaataacaaaatttattcgatttcttggttagtgcaatttctccaaaatgaacatgtattttgaaacgga 40886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 16983336 - 16983257
Alignment:
Q  6 aaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    ||||| || |||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||    
T  16983336 aaaaaaaaaaaaaattatttggtttcttggttactgcaatttctccaaaatggacatgtattttgaaacagagggagtat 16983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 15305216 - 15305265
Alignment:
Q  35 gttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  15305216 gttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 25683424 - 25683459
Alignment:
Q  3 atcaaaaataacaaaatttattgggtttcttggtta 38  Q
    |||||||||||||||||||||| |||||||||||||    
T  25683424 atcaaaaataacaaaatttatttggtttcttggtta 25683459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30403156 - 30403191
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggt 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30403156 tcatcaaaaataacaaaatttatttggtttcttggt 30403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 45537 - 45453
Alignment:
Q  1 tcatcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagtat 85  Q
    |||||||||||||||||||||||| ||||||||||||  | |||||||| ||||||| |||||||||||||||||||| ||||||    
T  45537 tcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 45453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 23520 - 23467
Alignment:
Q  31 cttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  23520 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 459 - 525
Alignment:
Q  3 atcaaaaataacaaaatttattgggtttcttggttactccaatttcttcaaaatggacatgtatttt 69  Q
    |||||||||||||||||||||| | ||| ||| ||||| |||||||  ||||||| |||||||||||    
T  459 atcaaaaataacaaaatttatttgattttttgattactgcaatttcgccaaaatgaacatgtatttt 525  T

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Target: scaffold1770 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 222 - 170
Alignment:
Q  32 ttggttactccaatttcttcaaaatggacatgtattttgaaacggagagagta 84  Q
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T  222 ttggttactgcaatttctccaaagtggatatgtattttgaaacggagggagta 170  T

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