View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12916_low_3 (Length: 238)
Name: NF12916_low_3
Description: NF12916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12916_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4235616 - 4235396
Alignment:
| Q |
1 |
tttaatgcaaggaaattggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttg |
100 |
Q |
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| T |
4235616 |
tttaatgcaaggaaattggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttg |
4235517 |
T |
|
| Q |
101 |
tgatggttgagtttttgaaaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattgg |
200 |
Q |
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| T |
4235516 |
tgatggttgagtttttgaaaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattgg |
4235417 |
T |
|
| Q |
201 |
atttgtggtgaagtttatacc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4235416 |
atttgtggtgaagtttatacc |
4235396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30441691 - 30441730
Alignment:
| Q |
1 |
tttaatgcaaggaaattggagaagaagaatgtgtttgaag |
40 |
Q |
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||||||||||||||||||||||| || ||||||||||||| |
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| T |
30441691 |
tttaatgcaaggaaattggagaacaaaaatgtgtttgaag |
30441730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6184740 - 6184518
Alignment:
| Q |
1 |
tttaatgcaaggaaattggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttg |
100 |
Q |
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| T |
6184740 |
tttaatgcaaggaaattggagaaaaagaatgtctttgaaggaatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttg |
6184641 |
T |
|
| Q |
101 |
tgatggttgagtttttgaaaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattgg |
200 |
Q |
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||||||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
6184640 |
tgatggttgagtttttgaagaagtttgctggtacagaaaggttgaattggagagaatggattatttgtattggttttggtgctgtttcttggccaattgg |
6184541 |
T |
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| Q |
201 |
atttgtggtgaagtttatacctg |
223 |
Q |
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||| | |||||||| ||||||| |
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| T |
6184540 |
ttttcttgtgaagttgatacctg |
6184518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29475884 - 29475953
Alignment:
| Q |
1 |
tttaatgcaaggaaattggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaa |
70 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||||| |
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| T |
29475884 |
tttaatgcaaggaaattggagaaaaagaatgtttttgaagggatatgtaaaagcaagttgttttagggaa |
29475953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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