View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12917_high_5 (Length: 407)
Name: NF12917_high_5
Description: NF12917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12917_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 44529603 - 44529657
Alignment:
| Q |
223 |
ccgatacatgtaccaacttacgtggacataccactctccaccacccttagttggc |
277 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44529603 |
ccgatacatgtaccaacttaggtggacataccactctccaccacccttagttggc |
44529657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 46035124 - 46035178
Alignment:
| Q |
223 |
ccgatacatgtaccaacttacgtggacataccactctccaccacccttagttggc |
277 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
46035124 |
ccgatacatgtaccaacttaggtggacataccactctccaccatccttagttggc |
46035178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 11762335 - 11762224
Alignment:
| Q |
107 |
aaaacaaagatacaaccct----tgcaacccaaccttgatcttgtcacctgtgttgtgagtattgagttaaatccgaacaccagtcttgttcataacatc |
202 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||| || | ||| | |||||||||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
11762335 |
aaaacaaagatacaaccctatattgctgcacaaccttgagctggccacttttgttgtgagtattgagttaaatccaaacaccatagtcactcataacatc |
11762236 |
T |
|
| Q |
203 |
acatctataatt |
214 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11762235 |
acatctataatt |
11762224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University