View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12917_high_9 (Length: 238)

Name: NF12917_high_9
Description: NF12917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12917_high_9
NF12917_high_9
[»] chr5 (3 HSPs)
chr5 (56-221)||(6158721-6158885)
chr5 (29-118)||(6158167-6158256)
chr5 (51-101)||(28704074-28704124)
[»] chr1 (1 HSPs)
chr1 (125-221)||(50173409-50173505)
[»] chr8 (4 HSPs)
chr8 (32-118)||(25497235-25497321)
chr8 (32-118)||(25401055-25401141)
chr8 (54-118)||(24898061-24898125)
chr8 (57-118)||(24899019-24899076)
[»] chr4 (6 HSPs)
chr4 (42-118)||(35313211-35313287)
chr4 (29-114)||(35313904-35313989)
chr4 (29-93)||(27992216-27992280)
chr4 (54-109)||(35313941-35313996)
chr4 (29-114)||(23242528-23242613)
chr4 (29-67)||(27992187-27992225)
[»] chr3 (1 HSPs)
chr3 (54-96)||(45003184-45003226)
[»] chr2 (2 HSPs)
chr2 (24-69)||(6282438-6282483)
chr2 (54-102)||(8273430-8273478)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 6158885 - 6158721
Alignment:
Q  56 agttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgacttctacgtgtgttatgattatcgctcatgttactatca 155  Q
    ||||||||| |||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  6158885 agttaactcgcgctagttttaatttccacgtgagtta-ctcacgttaattttaaacaatgacttctacgtgtgttatgattattgctcatgttactatct 6158787  T
Q  156 tttttgttgttatatttgctgggatgtagtaaagaaggatattacccctttacaggaactgaaaac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6158786 tttttgttgttatatttgctgggatgtagtaaagaaggatattacccctttacaggaactgaaaac 6158721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 6158167 - 6158256
Alignment:
Q  29 actcacgttagtgtaaatctctacatgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgact 118  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||||||| ||||||||||||    
T  6158167 actcacgctagtgtaaatctctacatgagttaactcacgttagttttaatttctccttgagttaactcacgttaattgtaaacaatgact 6158256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 28704124 - 28704074
Alignment:
Q  51 acatgagttaactcacgctagttctaatttctacgtgagttaactcgcgtt 101  Q
    |||||||||||||||||||||| | ||| || |||||||||||||| ||||    
T  28704124 acatgagttaactcacgctagtgcaaatgtcaacgtgagttaactcacgtt 28704074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 50173409 - 50173505
Alignment:
Q  125 tgtgttatgattatcgctcatgttactatcatttttgttgttatatttgctgggatgtagtaaagaaggatattacccctttacaggaactgaaaac 221  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  50173409 tgtgttatgattattgctcatgttactatcatttttgttgttatatttgctgggatatagtaaagaaggatattactcatttacaggaactgaaaac 50173505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 25497321 - 25497235
Alignment:
Q  32 cacgttagtgtaaatctctacatgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgact 118  Q
    ||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  25497321 cacgttagtgtaaatatctacgtgacttaactcacgctagttttaatttctacgtgagataactcacgttaattttaaacaatgact 25497235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 25401141 - 25401055
Alignment:
Q  32 cacgttagtgtaaatctctacatgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgact 118  Q
    |||| |||||||||| ||||| ||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  25401141 cacgatagtgtaaatatctacgtgaattaactcacgctagttttaatttctacgtgagataactcacgttaattttaaacaatgact 25401055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 24898061 - 24898125
Alignment:
Q  54 tgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgact 118  Q
    ||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  24898061 tgagttaacccacgttagttttaatttctacgtgagttaactcacgttaattttaaacaatgact 24898125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 24899076 - 24899019
Alignment:
Q  57 gttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgact 118  Q
    ||||||||||||||||| |||||||||||||    ||||| |||||||||||||||||||||    
T  24899076 gttaactcacgctagttttaatttctacgtg----aactcacgttaattttaaacaatgact 24899019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 35313211 - 35313287
Alignment:
Q  42 taaatctctacatgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaatgact 118  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||  |||||||||||||||    
T  35313211 taaatctctacgtgagttaaatcacgctagttttaatttctacgtgagttaactcacgttggttttaaacaatgact 35313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 35313989 - 35313904
Alignment:
Q  29 actcacgttagtgtaaatctctacatgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaaacaat 114  Q
    ||||||| |||||||||||||||| ||||||||||| || ||||| ||||||||| |||||||||||| | ||| |||||||||||    
T  35313989 actcacgctagtgtaaatctctacgtgagttaactcgcgttagttttaatttctaagtgagttaactcactttagttttaaacaat 35313904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 27992280 - 27992216
Alignment:
Q  29 actcacgttagtgtaaatctctacatgagttaactcacgctagttctaatttctacgtgagttaa 93  Q
    ||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  27992280 actcacgctagtgtaaatctctacatgagttaactcgcgttagttttaatttctacgtgagttaa 27992216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 35313996 - 35313941
Alignment:
Q  54 tgagttaactcacgctagttctaatttctacgtgagttaactcgcgttaattttaa 109  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||||| ||||||    
T  35313996 tgagttaactcacgctagtgtaaatctctacgtgagttaactcgcgttagttttaa 35313941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 23242528 - 23242613
Alignment:
Q  29 actcacgttagtgtaaatctctacatgagttaactcacgctag-ttctaatttctacgtgagttaactcgcgttaattttaaacaat 114  Q
    |||||||  ||||||||||||||| |||||||||||||| ||| || |||||| |||  ||||||||||||| || |||||||||||    
T  23242528 actcacgccagtgtaaatctctacgtgagttaactcacgttagtttttaatttttacacgagttaactcgcg-tagttttaaacaat 23242613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 27992187 - 27992225
Alignment:
Q  29 actcacgttagtgtaaatctctacatgagttaactcacg 67  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  27992187 actcacgctagtgtaaatctctacatgatttaactcacg 27992225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 45003226 - 45003184
Alignment:
Q  54 tgagttaactcacgctagttctaatttctacgtgagttaactc 96  Q
    |||||||||||||||||||  |||| |||||||||||||||||    
T  45003226 tgagttaactcacgctagtgttaatctctacgtgagttaactc 45003184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 6282483 - 6282438
Alignment:
Q  24 acttgactcacgttagtgtaaatctctacatgagttaactcacgct 69  Q
    |||| |||||||||||||| ||||||| | ||||||||||||||||    
T  6282483 acttaactcacgttagtgttaatctctgcgtgagttaactcacgct 6282438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 8273478 - 8273430
Alignment:
Q  54 tgagttaactcacgctagttctaatttctacgtgagttaactcgcgtta 102  Q
    ||||||||||||||||||| | ||| || |||||||||||||| |||||    
T  8273478 tgagttaactcacgctagtacaaatgtcaacgtgagttaactcacgtta 8273430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University