View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12917_low_2 (Length: 696)
Name: NF12917_low_2
Description: NF12917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12917_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 117 - 678
Target Start/End: Original strand, 24290607 - 24291156
Alignment:
| Q |
117 |
gaaatagaaaacaaatattagacagtacaatgcaaacttcattatggaacctagataaacttttccttcattgatgacggcaaagagaggctgcacttgt |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
24290607 |
gaaaaagaaaacaaatattagacagtacaatgcaaacttctttatggaacctaaataaacttttccttcattgatgacagcaaagagaagctgcacttgt |
24290706 |
T |
|
| Q |
217 |
nnnnnnntcattttcagttatctacccattcaacatttaattcaaaaattaaagaaaaaagtctcaattgtgtggta-gctgcgttt-tttaaccaatat |
314 |
Q |
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| T |
24290707 |
aaaaaaatcattttcaattatctacccattcaacatctaattcaaaaattaaagaaaaaagtctcacttgtgaggcaagctgcgtttctttaaccaagat |
24290806 |
T |
|
| Q |
315 |
atatggaaatgaaacaaaaaagttaatagcaaaaaagtttattaagaaattacagggaactgaatgtaaaaggaaaagacatagagacaatcaataccat |
414 |
Q |
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| T |
24290807 |
atatgaatatgaaacaaaaaagttaagagcaaaaaaatttattaagaaattacggggaactaaatgtaaaaggaaaagaca--gagacaatcaataccat |
24290904 |
T |
|
| Q |
415 |
ttagttagggacgtcataaaaaaggctcggaaaactgtctcctcaagaagtggagcaaaaacgcctgtaatgcccaccaaacaagcagtgctacaaagaa |
514 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
24290905 |
ttagttagggacgtcataaaaaagcctcggaaaactgtctcctcaagaagtggagcaaaaacgcctgtgatgcccaccaaacaagcagtgctacaatgaa |
24291004 |
T |
|
| Q |
515 |
aataaacacgatcagtcacttgcttgagaatctgggatatcgaacctaaatgagaattttttgacaactcttctttctccattgataggagaaatatgat |
614 |
Q |
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| T |
24291005 |
aataaacacaatcggtcgtttgcttgagaatctgtgatacagaacctaaatgaaaacgttttgacaattcttctttctctattgataggagaa-----tt |
24291099 |
T |
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| Q |
615 |
atgatattaaattcaattcacaacatttgttaatcacaaaaattatatttttaaatgcctctgc |
678 |
Q |
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| T |
24291100 |
atgattttaagttcaattcacaac-------gatcacaaaaattatatttttaaatgcctctgc |
24291156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 29484108 - 29484000
Alignment:
| Q |
8 |
tgagaagaaactgccaagtgaaaagattaattttgagagacattgattttagccaatagtgacaagcgctacccacataatagcctttgaacggatgtaa |
107 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29484108 |
tgagaaaaaactgccaagtgaaaagattaactttgagaggcattacttttagccaatagtgacaagcgctacccacataatagcctttggacggatgtaa |
29484009 |
T |
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| Q |
108 |
ttgccacac |
116 |
Q |
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||||||||| |
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| T |
29484008 |
ttgccacac |
29484000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 24285036 - 24285146
Alignment:
| Q |
8 |
tgagaagaaactgccaa-gtgaaaagattaattttgagagacattgattttagccaatag-tgacaagcgctacccacataatagcctttgaacggatgt |
105 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||| |||||||| |
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| T |
24285036 |
tgagaagaaactgccaatgtgaaaagattaactttgagagacactaattttagccaataggtaacaagcgctacccacataatagcctttagacggatgt |
24285135 |
T |
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| Q |
106 |
aattgccacac |
116 |
Q |
| |
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| T |
24285136 |
aactgccacac |
24285146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 24280837 - 24280947
Alignment:
| Q |
8 |
tgagaagaaactgccaa-gtgaaaagattaattttgagagacattgattttagccaatag-tgacaagcgctacccacataatagcctttgaacggatgt |
105 |
Q |
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|||||||||||| |||| ||||||||||||| ||||||||||| | |||||||||||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
24280837 |
tgagaagaaactaccaatgtgaaaagattaactttgagagacactaattttagccaataggtaacaagcgctacccacatagtagcctttggacggatgt |
24280936 |
T |
|
| Q |
106 |
aattgccacac |
116 |
Q |
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| T |
24280937 |
aactgccacac |
24280947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 23502928 - 23503031
Alignment:
| Q |
11 |
gaagaaactgccaagtgaaaagattaattttgagagacattgattttagccaatagtgacaagcgctacccacataatagcctttgaacggatgtaattg |
110 |
Q |
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||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |
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| T |
23502928 |
gaagaaactgccaagtgaaaagattaactttgagagacactaattttagccaatagtgaagagcgctactcacataatagcctttggacggatgtaattg |
23503027 |
T |
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| Q |
111 |
ccac |
114 |
Q |
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|||| |
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| T |
23503028 |
ccac |
23503031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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