View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12917_low_3 (Length: 565)

Name: NF12917_low_3
Description: NF12917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12917_low_3
NF12917_low_3
[»] chr4 (7 HSPs)
chr4 (18-547)||(48965720-48966249)
chr4 (24-177)||(48962691-48962844)
chr4 (323-504)||(48958837-48959018)
chr4 (24-185)||(48911963-48912124)
chr4 (323-504)||(48962978-48963159)
chr4 (34-186)||(48958554-48958706)
chr4 (31-189)||(48974513-48974671)
[»] chr6 (3 HSPs)
chr6 (15-186)||(12589786-12589957)
chr6 (24-106)||(12483161-12483243)
chr6 (324-476)||(12589508-12589660)
[»] chr2 (3 HSPs)
chr2 (34-187)||(13440607-13440760)
chr2 (17-303)||(13448753-13449039)
chr2 (335-504)||(13440908-13441077)
[»] scaffold0536 (2 HSPs)
scaffold0536 (31-185)||(6129-6283)
scaffold0536 (24-108)||(10190-10274)
[»] chr5 (2 HSPs)
chr5 (34-109)||(28385741-28385816)
chr5 (34-109)||(12541092-12541167)
[»] chr8 (1 HSPs)
chr8 (46-120)||(12641164-12641238)


Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Original strand, 48965720 - 48966249
Alignment:
Q  18 tcactgcactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  48965720 tcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctactcac 48965819  T
Q  118 ataatacttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctctttctccagcattgatcccataaattct 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965820 ataatatttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctctttctccagcattgatcccataaattct 48965919  T
Q  218 tctgatgactttggctgtcttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatccatatgaggatata 317  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965920 tctgatgactttggcagtcttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatccatatgaggatata 48966019  T
Q  318 ttgatgggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  48966020 ttgatgggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattcgggacccaaagcttactggccaagtcatg 48966119  T
Q  418 aacccaagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgctccagcgtatagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  48966120 aacccaagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgctcctgcgtatagt 48966219  T
Q  518 ttgccggaggaggcaagatcaggggtgttg 547  Q
    ||||||||||||||||||||||||||||||    
T  48966220 ttgccggaggaggcaagatcaggggtgttg 48966249  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 48962691 - 48962844
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataata 123  Q
    ||||||| |||||||| ||||||||||||||||| |  || |||||||||||| ||||||| |||||||||||||| ||||||||| | ||||| || |     
T  48962691 cactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtg 48962790  T
Q  124 cttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccatt 177  Q
     |  ||| ||||||| |||||||| |||||||| ||||||||||||||||||||    
T  48962791 ttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatgagtccatt 48962844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 323 - 504
Target Start/End: Original strand, 48958837 - 48959018
Alignment:
Q  323 gggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccc 422  Q
    |||||| ||||||||| |||||||||  | |||||||| |||||||||||| |||||||||   |||| |   |||||||| |||||||||||| |||||    
T  48958837 gggtttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcataaaccc 48958936  T
Q  423 aagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc 504  Q
    | ||||  | | ||||| | || || |||||||||||||| |||||||||||||  ||||| |||||  |||||||||||||    
T  48958937 aggggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattgc 48959018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 48912124 - 48911963
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataata 123  Q
    ||||||||| ||| ||||| || |||||||||| |||  | |||||||||||||||||||||||||||||||| || ||||  ||  | ||||| || |     
T  48912124 cactctcttctcctctctcagccttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtg 48912025  T
Q  124 cttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga 185  Q
     |  || |||||||| |||||||| ||||| ||||||||||||| || ||| ||||||||||    
T  48912024 ttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttga 48911963  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 504
Target Start/End: Original strand, 48962978 - 48963159
Alignment:
Q  323 gggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccc 422  Q
    |||||| ||||||||| |||||||||  | || ||||| | |||||||||| ||||||| |   |||||| | |||||||| |  ||||||||| |||||    
T  48962978 gggtttattctaagggattccatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaaccc 48963077  T
Q  423 aagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc 504  Q
    | ||||| |   ||||    ||||| |||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  48963078 atgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc 48963159  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 48958554 - 48958706
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatgtac 133  Q
    ||||||||||| |||||||||||  || |  |||||||||||||| ||||||||||||||| |||| ||||||||| | ||||  || |  |  ||| ||    
T  48958554 tcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcac 48958653  T
Q  134 tcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgag 186  Q
    ||||| || ||||| |||  ||| |||||||  |||||||| |||||||||||    
T  48958654 tcttcaccatcaagttcaatgaagttgttgatgatgagtcccttacttttgag 48958706  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 48974513 - 48974671
Alignment:
Q  31 ttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatg 130  Q
    ||||||||| |||||||||||||||   ||| ||| ||| ||||||| ||| || | |||||||||   ||||||  |  | |||||||||| ||  |||    
T  48974513 ttgtcccctatctgctttctcttgagtggtcctacaaatgagagaagatggtcccaaatgccaagctcgatgacctattgttttctcataatgctcgatg 48974612  T
Q  131 tactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctc 189  Q
    |||||||| || |||||||||| ||| |||||||| ||||| ||||  |||||||||||    
T  48974613 tactcttctccatcaagctcagtgaagttgttgacgatgagcccatagcttttgagctc 48974671  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 12589957 - 12589786
Alignment:
Q  15 cgttcactgcactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctatt 114  Q
    |||||||  ||||||| | |||||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||| ||| | ||    
T  12589957 cgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttgtgacctgtggtttt 12589858  T
Q  115 ctcataatacttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgag 186  Q
    |||||| |  || |   ||||||  || ||||| |||||||| ||||| |||||||||||||||||||||||    
T  12589857 ctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagtccattacttttgag 12589786  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 12483243 - 12483161
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgaccc 106  Q
    ||||||| | |||||||||||| || ||||||||||| | || |||||| |||  |||||| | |||||||||||| ||||||    
T  12483243 cactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaatgccaagccttgtgaccc 12483161  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 476
Target Start/End: Complemental strand, 12589660 - 12589508
Alignment:
Q  324 ggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccca 423  Q
    ||||||||||||||| |||||  ||| | || ||||| ||||||||| |  ||||||||||  ||||||   |||||||| |||||| ||||| |||||     
T  12589660 ggtttgttctaagggattccaaaagagagactgtaaagagggagaaaacggtgaaggcgaggatggggatttgaagcttatgggccatgtcataaacccc 12589561  T
Q  424 agggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaat 476  Q
     ||||| | | | ||  |||||||  ||||||||||||| |||| ||| ||||    
T  12589560 tgggtatatgcaatcggcaatgatgtagtcaggtggatccttctgcatcaaat 12589508  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 13440607 - 13440760
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatgtac 133  Q
    |||||||||||||||||||||||  || |||||||||||||||| |||||| ||||||||| |||| ||||||||| | |||||||| |  |  ||| ||    
T  13440607 tcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcac 13440706  T
Q  134 tcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagc 187  Q
    ||||| |||||||| |||| ||| |||||||  |||||| | ||||||||||||    
T  13440707 tcttctccgtcaagttcagtgaagttgttgatgatgagtgctttacttttgagc 13440760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 13448753 - 13449039
Alignment:
Q  17 ttcactgcactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattct 116  Q
    ||||| |||| ||| | ||||||||||| |||||||||| |||| || ||||||||||||| |||||||||||||||| |||| |||||||||   ||||    
T  13448753 ttcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttct 13448852  T
Q  117 cataatacttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttgagctctttctccagcattgatcccataaattc 216  Q
    | || |  |  ||| ||||||| || ||||| |||  ||| |||||||  || ||| | |||||||| ||| |  |||| |||||   |||||| || |     
T  13448853 cgtagtgttgtatgcactcttctccatcaagttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaa-ta 13448951  T
Q  217 ttctgatga-ctttggctgtcttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatc 303  Q
    | | ||| | ||||||| || ||||| ||||||||||| ||||||| |||||| |||||||||| ||||  ||||| |||||||||||    
T  13448952 taccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc 13449039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 504
Target Start/End: Original strand, 13440908 - 13441077
Alignment:
Q  335 agggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaacccaagggtacaaga 434  Q
    |||| ||||| |||| | |||||||| || || || |||||||| | ||| || |||| | |||||||| | |||||||||| | |||| |||||   |     
T  13440908 agggattccacgagagagacggtaaaaagtgacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagcccatgggtatgcgg 13441007  T
Q  435 agtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc 504  Q
    ||||    |||||||| || |||||||||||||||||||||| || ||| | | | ||||||||||||||    
T  13441008 agtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgc 13441077  T

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Target: scaffold0536 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 6283 - 6129
Alignment:
Q  31 ttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcataatacttaatg 130  Q
    ||||||||||| |||||| |||||||||||  |||||||||||||||| ||||||||||||||||| || ||||| ||  | ||||| || |  |  |||    
T  6283 ttgtcccctctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatg 6184  T
Q  131 tactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga 185  Q
    |||||||| |||||||| ||||  |||||||| ||||||| ||| || |||||||    
T  6183 tactcttcaccgtcaagttcagaaaaattgttaacaatgattccgttgcttttga 6129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 10274 - 10190
Alignment:
Q  24 cactctcttgtcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgt 108  Q
    |||||| || ||| ||||||| |||||||||||||||  |||||| |||| ||||||||| |||||||||||| || ||||||||    
T  10274 cactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttctgacccgt 10190  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 28385741 - 28385816
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 109  Q
    |||| |||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||| |||||||||    
T  28385741 tcccttctctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtg 28385816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 12541092 - 12541167
Alignment:
Q  34 tcccctctctgctttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtg 109  Q
    ||||||| |||||||||||||||   | ||  |||||| ||||| ||||||||||||||||||||| |||||||||    
T  12541092 tcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtg 12541167  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 12641238 - 12641164
Alignment:
Q  46 tttctcttgaacagtcttacgaataagagaagctggaccaagatgccaagccttatgacccgtgctattctcata 120  Q
    |||||||| || ||| || ||||||||| ||| ||||||||||||||||||||| | |||| || | ||||||||    
T  12641238 tttctcttcaaaagttttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcata 12641164  T

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