View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12917_low_4 (Length: 436)
Name: NF12917_low_4
Description: NF12917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12917_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 91 - 421
Target Start/End: Original strand, 21113104 - 21113437
Alignment:
| Q |
91 |
agatttttatttataatacgactagaggatgtaagaaacaaaatataataaaattatcttaaagtcgacctc---ttataaatgtaaaagatattcttca |
187 |
Q |
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| T |
21113104 |
agatttttgtttataatacgactagagaatgtaagaaacaaaatataataaaaatatcttaaagtcgacctcctcttaaaaatgtaaaagatattcttca |
21113203 |
T |
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| Q |
188 |
aaatatttatttaatacaatttatttgttcttaataaacatccaaaaagactagttatcacttttaatttatattactacacctatcccaatagtataat |
287 |
Q |
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|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21113204 |
aaatgtttttttaatataatttatttgttcttaataaacatccaaaaagactagttatcacttttaatttatattactacacctatcccaatagtataat |
21113303 |
T |
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| Q |
288 |
acacccgatattttttaaattattcctgttaaaacaaaatatatccttccaattatagaggttgacaaaatcatcaatttcataatccaaattgaatgct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21113304 |
acacccgatattttttaaattattcctgttaaaacaaaatatatccttccaattatagaggttgacaaaatcatcaatttcataatccaaattgaatgct |
21113403 |
T |
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| Q |
388 |
cgtggacatatcatgacatagttaaattaaaatt |
421 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21113404 |
cgtggacatatcatgacatagttaaattaaaatt |
21113437 |
T |
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