View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12917_low_7 (Length: 322)
Name: NF12917_low_7
Description: NF12917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12917_low_7 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 21112697 - 21113022
Alignment:
| Q |
1 |
tccatatattttaattttaaatacaaaacaaagggtacatgttatttgcacaccttgcaaaatcattcttagaatatttagttctgaacacaaaaatctc |
100 |
Q |
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| T |
21112697 |
tccatatattttaattttaaatacaaaacaaagggtacatgttatttgcacaccttgcaaagtcattcttagaatatttagttctgaatacaaaaatctc |
21112796 |
T |
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| Q |
101 |
ctccgatatgttttcctaattgacatacacaaatccaataattactcatatcgaggaaatcaaaaatttgagagcaacagacttaacctctttctacaaa |
200 |
Q |
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| T |
21112797 |
ctccgatatgttttcctaattgacatacacaaatccaataattactcatatcgaggaaatcaaaaatttgagagcaagagacttaacctctttctacaaa |
21112896 |
T |
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| Q |
201 |
agtcaacatcg----attaatttatnnnnnnnncgctaacaaatgttattatagaaatatacctttcggtcactattgtaaataaaaaatatattttaga |
296 |
Q |
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| T |
21112897 |
agtcaacatcgattaattaatttataaaaaaaacgctaacaaatgttattatagaaatatacctttcaatcactattgtaagtaaaaaatatattttaga |
21112996 |
T |
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| Q |
297 |
tttatttattaaataatgtacgtaat |
322 |
Q |
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| T |
21112997 |
ttcatttattaaataatgtacgtaat |
21113022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 36916731 - 36916665
Alignment:
| Q |
251 |
aaatatacctttcggtcactattgtaaataaaaaat-atattttagatttatttattaaataatgta |
316 |
Q |
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| T |
36916731 |
aaatataccattcggtcactattataagcaaaattttatattttagatttatttattaaataatgta |
36916665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 40448 - 40511
Alignment:
| Q |
254 |
tatacctttcggtcactattgtaaataaaaa-atatattttagatttatttattaaataatgta |
316 |
Q |
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| T |
40448 |
tatacctttcggtcactattataaataaaaatcaacattttagatttattcattaaatgatgta |
40511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 38784556 - 38784607
Alignment:
| Q |
263 |
cggtcactattgtaaataaaaaa-tatattttagatttatttattaaataat |
313 |
Q |
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| T |
38784556 |
cggtcactattataaaaaaaaaactatattttagatttattcattaaataat |
38784607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 32460873 - 32460824
Alignment:
| Q |
268 |
actattgtaaataaaaaata-tattttagatttatttattaaataatgta |
316 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
32460873 |
actattataaataaaaaataatattttaaatttatttattaaatgatgta |
32460824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 32226583 - 32226631
Alignment:
| Q |
266 |
tcactattgtaaataaaaaata-tattttagatttatttattaaataat |
313 |
Q |
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| T |
32226583 |
tcactattataaataaacattaatattttagatttatttattaaataat |
32226631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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