View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12918_high_13 (Length: 304)
Name: NF12918_high_13
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12918_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38321296 - 38321009
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321296 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
38321197 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321196 |
tagcagtttcccttaaaggcaacaagaacacacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
38321097 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaag |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321096 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaag |
38321009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38326046 - 38325759
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
|
||||||||||||| |||| || || ||| ||||||||| |||||||||||||||||||| |||| || ||||||||||| | |||| |||||||||||| |
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| T |
38326046 |
tcatcttcatctcccaaagtagcaactagaacacattggactttccaaacttgcaaaaattacaaattggaagtaggatgcgttgtgtcattaatcatgt |
38325947 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
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|||||||||| | |||||||||||||| ||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38325946 |
tagcagtttcacaaaaaggcaacaagaatgcacagatcttttctactcttttctactcttctaccgaaggacataactcataattatcctcatacaagtg |
38325847 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaag |
288 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||| |
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| T |
38325846 |
aagactttcaaacacacgccgatatttaagagcactttcaagcatcaaataagttgagttcagactcatagacgagtcctgatgcaag |
38325759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38300551 - 38300264
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||| |
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| T |
38300551 |
tcatcttgatctcccaaacaatcaactaaaaggcattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgt |
38300452 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
| |
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| |||||||| || ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38300451 |
tggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtg |
38300352 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaag |
288 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| | ||| | |||||||||||||| |
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| T |
38300351 |
aagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgagttcactcttttaggcgtgtccagatgcaag |
38300264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38313792 - 38313505
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| || |||||||||||||| |
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| T |
38313792 |
tcatcttcatctcccaaactatcaactaaaacacattgaagtttccaaacttgcgaaaaatacaagttggaagtaggatgtgttgcgccattaatcatgt |
38313693 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
| |
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| |||||||| | ||||| |||||||| |||||||||||||| ||||||||||| |||||| ||| ||||||| | ||||||| ||||||||||||||| |
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| T |
38313692 |
tggcagtttcacaaaaaggtaacaagaatgcacaaatcttttctactcttttccagtcttctgccgcaggacatgaatcataatcatcatcatacaagtg |
38313593 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaag |
288 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||| |
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| T |
38313592 |
aagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgcaag |
38313505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 38317199 - 38316916
Alignment:
| Q |
3 |
atcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgtta |
102 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||||| | |||| ||||||||||||| |
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| T |
38317199 |
atcttcatctcccaaactatcaactagaacacattggactttccaaacttgcaaaaaacacaagtttgaagtaggatgcgttgtgtcattaatcatgttg |
38317100 |
T |
|
| Q |
103 |
gcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtgaa |
202 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||| || | | | |||||||||||| |||||||||||||||||||||| |
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| T |
38317099 |
gcagtttcataaaaaggcagcaagaacgcacaaatcttttcaactcttttccactcatgtgctaaaggacataactggtaattatcatcatacaagtgaa |
38317000 |
T |
|
| Q |
203 |
gactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgca |
286 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |
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|
| T |
38316999 |
aactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgca |
38316916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 38309198 - 38308912
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
|
||||||||||||| |||| ||||| ||| ||||||||| ||||||||||||||||||||||||| ||| |||||| |||||| || ||||| ||| ||| |
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|
| T |
38309198 |
tcatcttcatctcccaaattatcaactagaacacattggactttccaaacttgcaaaaaatacaagttggaagtacgatgtgttgcaccatttatcgtgt |
38309099 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
| |
|
| |||||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||| ||| ||||||| | |||||| ||| ||||||||||| |
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|
| T |
38309098 |
tggcagtttcgctaaaaggcaacaagaatgcacaaatcttttctactcttttccactcttctgccgcaggacatgaatcataaccatcgtcatacaagtg |
38308999 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaa |
287 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
38308998 |
aagactttcaaatgcaagctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatgtctagatgcaa |
38308912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38306460 - 38306183
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
|
||||||||||||| |||||||||| | | ||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||| || ||||| ||||||| |
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|
| T |
38306460 |
tcatcttcatctcccaaactatcaacaagaacacattggactttccaaacttgcaaaaaatacaagttggaagtgggatgtgttgcaccattgatcatgt |
38306361 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
| |
|
| |||||||| | |||||||||| ||| |||||||||||||| |||||||| || |||||||| | |||||| | ||||||||||||| |
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|
| T |
38306360 |
tggcagtttcacgaaaaggcaacatgaatgcacaaatcttttccactcttttgca----------gaaggacacgagacataatcaccatcatacaagtg |
38306271 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaag |
288 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38306270 |
aaaactttcaaacacatgttgatatttaagagcactatcgagcatcaaataagttgagttcacagtcatagacatgtccatatgcaag |
38306183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 38850144 - 38850434
Alignment:
| Q |
1 |
tcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgctgtgccattaatcatgt |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||| |||||||||||||| |||||||||| ||| ||||||||||||| ||||| ||||||||||| |
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|
| T |
38850144 |
tcatcttcatctcccaaactatcaactagaacacattggactttccaaacttgtaaaaaatacaagttggaagtaggatgtgttgtgctattaatcatgt |
38850243 |
T |
|
| Q |
101 |
tagcagtttcccttaaaggcaacaagaacgcacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtg |
200 |
Q |
| |
|
| |||||||| | |||||||||| ||| |||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||| |
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|
| T |
38850244 |
tggcagtttcacaaaaaggcaacaggaatgcacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtg |
38850343 |
T |
|
| Q |
201 |
aagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaagtga |
291 |
Q |
| |
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|| |||||||||| |||||| ||||||||||| |||||||||| || ||||||||| ||| | ||||||| || |||| ||| |||||| |
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| T |
38850344 |
aaaactttcaaacgcacaccggtatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagtga |
38850434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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