View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12918_high_9 (Length: 349)

Name: NF12918_high_9
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12918_high_9
NF12918_high_9
[»] chr8 (4 HSPs)
chr8 (1-334)||(42312066-42312399)
chr8 (133-190)||(8333926-8333983)
chr8 (142-190)||(12049540-12049588)
chr8 (6-58)||(15580687-15580739)
[»] chr1 (3 HSPs)
chr1 (1-331)||(47247013-47247344)
chr1 (1-121)||(41326063-41326183)
chr1 (230-334)||(41325948-41326051)
[»] chr6 (5 HSPs)
chr6 (147-334)||(20909015-20909202)
chr6 (147-334)||(20923463-20923650)
chr6 (1-87)||(20909199-20909285)
chr6 (1-87)||(20923647-20923733)
chr6 (33-104)||(27445745-27445817)
[»] scaffold0003 (2 HSPs)
scaffold0003 (26-104)||(34871-34950)
scaffold0003 (33-104)||(41541-41613)


Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 42312399 - 42312066
Alignment:
Q  1 ttatcaatgacactcttgctggacaaactgggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctatgatgtggatgaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  42312399 ttatcaatgacactcttgctggacaaactgggggtgttcattcattgaagcaggaaaagaacaaaaatataaaaggtgactttctctgatgtagatgaaa 42312300  T
Q  101 tactatgagtgaaattatacatgtttgttattgtgtttcactgttgctattgcaagtaatacaattggatcatctcatttgatacatcaattgaccgcac 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42312299 tactatgagcgaaattatacatgtttgttattgtgtttcactgttgctattgcaagtaatacaagtggatcatctcatttgatacatcaattgaccgcac 42312200  T
Q  201 atcatattatcacttttaaagtttatcgacattgttttatatatttgtttttcagccctgcattttatgctcactcataaaacattgaacctcatttcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42312199 atcatattatcacttttaaagtttatcgacattgttttatatatttgtttttcagccctgcattttatgctcactcataaaacattgaacctcatttcac 42312100  T
Q  301 atttgcctctctttcatcccgacagttactttgt 334  Q
    |||||||||||||||||||| |||||||||||||    
T  42312099 atttgcctctctttcatccctacagttactttgt 42312066  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 8333926 - 8333983
Alignment:
Q  133 gtgtttcactgttgctattgcaagtaatacaattggatcatctcatttgatacatcaa 190  Q
    |||| |||||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  8333926 gtgtctcactgttgctattgcaagtaatacggctggatcatctcattcgatacatcaa 8333983  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 12049540 - 12049588
Alignment:
Q  142 tgttgctattgcaagtaatacaattggatcatctcatttgatacatcaa 190  Q
    ||||||||| |||||||| |||  |||||||||||||||||||||||||    
T  12049540 tgttgctatggcaagtaacacagctggatcatctcatttgatacatcaa 12049588  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 15580739 - 15580687
Alignment:
Q  6 aatgacactcttgctggacaaactgggggtgttcattcattgaagcaggaaaa 58  Q
    ||||||||||||||| ||  |||||||| ||||| |||||| |||||||||||    
T  15580739 aatgacactcttgctagattaactggggttgttctttcattaaagcaggaaaa 15580687  T

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Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 47247013 - 47247344
Alignment:
Q  1 ttatcaatgacactcttgctggacaaa-ctgggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctatgatgtggatgaa 99  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47247013 ttatcaatgacactcttgctagacaaatcggggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctatgatgtagatgaa 47247112  T
Q  100 atactatgagtgaaattatacatgtttgttattgtgtttcactgttgctattgcaagtaatacaattggatcatctcatttgatacatcaattgaccgca 199  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  47247113 atactataagcgaaattatacatgtttgttattgtgtttcactgttgctattgcaagtaatacaagtggatcatctcatttgatacattaattgaccgca 47247212  T
Q  200 catcatattatcacttttaaagtttatcgacattgttttatatatttgtttttcagccctgcattttatgctcactcataaaacattgaacctcatttca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47247213 catcatattatcacttttaaagtttatcgacattgttttatatatttgtctttcaaccctgcattttatgctcactcataaaacattgaacctcatttca 47247312  T
Q  300 catttgcctctctttcatcccgacagttactt 331  Q
    |||||| |||||||||||||||||||||||||    
T  47247313 catttgtctctctttcatcccgacagttactt 47247344  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 41326183 - 41326063
Alignment:
Q  1 ttatcaatgacactcttgctggacaaactgggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctatgatgtggatgaaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  41326183 ttatcaatgacactcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaaaaaataaaaggtgactttctatgatgtagatgaaa 41326084  T
Q  101 tactatgagtgaaattataca 121  Q
     |||||||| |||||||||||    
T  41326083 aactatgagcgaaattataca 41326063  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 41326051 - 41325948
Alignment:
Q  230 cattgttttatatatttgtttttcagccctgcattttatgctcactcataaaacattgaacctcatttcacatttgcctctctttcatcccgacagttac 329  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41326051 cattgttttatatatttgtctttcagacctacattttatgctcact-ataaaacattgaacctcatttcacatttgcctctctttcatcccgacagttac 41325953  T
Q  330 tttgt 334  Q
    |||||    
T  41325952 tttgt 41325948  T

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Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 20909202 - 20909015
Alignment:
Q  147 ctattgcaagtaatacaattggatcatctcatttgatacatcaattgaccgcacatcatattatcacttttaaagtttatcgacattgttttatatattt 246  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20909202 ctattgcaagtaatacaagtggatcatctcatttgatacatcaattgaccgcacatcatattatcacttttaaagtttatcgacattgttttatatattt 20909103  T
Q  247 gtttttcagccctgcattttatgctcactcataaaacattgaacctcatttcacatttgcctctctttcatcccgacagttactttgt 334  Q
    || ||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20909102 gtctttcaaccctaaattttatgctcactcctaaaacattgaacctcatttcacatttgcctctctttcatcccgacagttactttgt 20909015  T

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Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 20923650 - 20923463
Alignment:
Q  147 ctattgcaagtaatacaattggatcatctcatttgatacatcaattgaccgcacatcatattatcacttttaaagtttatcgacattgttttatatattt 246  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923650 ctattgcaagtaatacaagtggatcatctcatttgatacatcaattgaccgcacatcatattatcacttttaaagtttatcgacattgttttatatattt 20923551  T
Q  247 gtttttcagccctgcattttatgctcactcataaaacattgaacctcatttcacatttgcctctctttcatcccgacagttactttgt 334  Q
    || ||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923550 gtctttcaaccctaaattttatgctcactcctaaaacattgaacctcatttcacatttgcctctctttcatcccgacagttactttgt 20923463  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20909285 - 20909199
Alignment:
Q  1 ttatcaatgacactcttgctggacaaactgggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctat 87  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20909285 ttatcaatgacactcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaaaatataaaaggtgactttctat 20909199  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20923733 - 20923647
Alignment:
Q  1 ttatcaatgacactcttgctggacaaactgggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtgactttctat 87  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20923733 ttatcaatgacactcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaaaatataaaaggtgactttctat 20923647  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 27445745 - 27445817
Alignment:
Q  33 ggtgttcattcattgaagcaggaaaacaacaaa-aatataaaaggtgactttctatgatgtggatgaaatact 104  Q
    ||||||||||| |||||||||||||||||||||   ||| |||||||||||| |||||| |  ||||||||||    
T  27445745 ggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 27445817  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 34950 - 34871
Alignment:
Q  26 aactgggggtgttcattcattgaagcaggaaaacaacaaa-aatataaaaggtgactttctatgatgtggatgaaatact 104  Q
    |||||||||||||||||| |||||||| ||||||||||||   ||| |||||||||||| |||||| |  ||||||||||    
T  34950 aactgggggtgttcattccttgaagcatgaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact 34871  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 41613 - 41541
Alignment:
Q  33 ggtgttcattcattgaagcaggaaaacaacaaa-aatataaaaggtgactttctatgatgtggatgaaatact 104  Q
    ||||||||||| |||||||||||||||||||||   ||| |||||||||||| |||||| |  ||||||||||    
T  41613 ggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 41541  T

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