View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12918_low_1 (Length: 749)

Name: NF12918_low_1
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12918_low_1
NF12918_low_1
[»] chr2 (31 HSPs)
chr2 (9-735)||(32177910-32178628)
chr2 (248-546)||(32186860-32187154)
chr2 (14-167)||(32159061-32159213)
chr2 (14-142)||(32175366-32175493)
chr2 (259-457)||(36711341-36711547)
chr2 (54-159)||(32111663-32111767)
chr2 (14-133)||(32119732-32119850)
chr2 (14-142)||(32183387-32183514)
chr2 (14-135)||(32205346-32205466)
chr2 (178-234)||(8039869-8039924)
chr2 (177-233)||(16940440-16940496)
chr2 (177-233)||(17011105-17011161)
chr2 (54-135)||(32211107-32211187)
chr2 (178-234)||(34682567-34682622)
chr2 (177-216)||(36757992-36758031)
chr2 (178-233)||(39482746-39482800)
chr2 (177-216)||(42039900-42039939)
chr2 (177-218)||(20522045-20522086)
chr2 (178-218)||(10445678-10445718)
chr2 (177-216)||(13569155-13569194)
chr2 (177-216)||(23078703-23078742)
chr2 (178-216)||(10707485-10707523)
chr2 (177-218)||(17865028-17865069)
chr2 (177-218)||(21629776-21629816)
chr2 (177-214)||(28259408-28259445)
chr2 (177-218)||(33528852-33528893)
chr2 (177-216)||(34388686-34388725)
chr2 (177-219)||(8390384-8390426)
chr2 (179-212)||(11099163-11099196)
chr2 (177-218)||(40014753-40014794)
chr2 (478-531)||(41545610-41545663)
[»] chr4 (19 HSPs)
chr4 (178-233)||(3796754-3796808)
chr4 (177-233)||(54866993-54867048)
chr4 (178-233)||(24333621-24333675)
chr4 (177-235)||(25862253-25862310)
chr4 (350-414)||(46676339-46676402)
chr4 (177-216)||(16624240-16624279)
chr4 (177-216)||(16630911-16630950)
chr4 (177-218)||(10047204-10047245)
chr4 (177-216)||(5147504-5147543)
chr4 (177-216)||(8689709-8689748)
chr4 (478-525)||(51421935-51421982)
chr4 (178-216)||(38152672-38152710)
chr4 (183-216)||(5397069-5397102)
chr4 (181-218)||(39245818-39245855)
chr4 (177-217)||(34496054-34496093)
chr4 (177-216)||(5143086-5143125)
chr4 (177-218)||(1983530-1983570)
chr4 (179-212)||(29760470-29760503)
chr4 (177-218)||(42599808-42599849)
[»] chr8 (13 HSPs)
chr8 (177-234)||(9766051-9766107)
chr8 (178-233)||(6127029-6127083)
chr8 (178-218)||(5702715-5702755)
chr8 (177-216)||(19175988-19176027)
chr8 (177-233)||(4455838-4455894)
chr8 (178-218)||(26403463-26403503)
chr8 (177-218)||(4696834-4696875)
chr8 (177-214)||(7412166-7412203)
chr8 (178-216)||(28307384-28307421)
chr8 (177-218)||(6813503-6813543)
chr8 (179-212)||(10689379-10689412)
chr8 (176-233)||(23799808-23799863)
chr8 (179-212)||(36979205-36979238)
[»] chr7 (22 HSPs)
chr7 (177-233)||(29159613-29159668)
chr7 (177-233)||(49091472-49091528)
chr7 (177-218)||(4796901-4796942)
chr7 (177-218)||(46516542-46516583)
chr7 (181-233)||(2647962-2648013)
chr7 (177-218)||(9235788-9235829)
chr7 (177-218)||(23403244-23403285)
chr7 (178-218)||(20283914-20283954)
chr7 (178-217)||(9190240-9190279)
chr7 (479-518)||(31681057-31681096)
chr7 (177-216)||(35960641-35960680)
chr7 (176-218)||(3047077-3047118)
chr7 (185-218)||(55764-55797)
chr7 (177-214)||(2479168-2479205)
chr7 (177-218)||(33332681-33332722)
chr7 (478-518)||(26332910-26332950)
chr7 (478-518)||(44951360-44951400)
chr7 (178-217)||(9185395-9185434)
chr7 (477-520)||(44401162-44401205)
chr7 (179-212)||(2057786-2057819)
chr7 (177-214)||(44848916-44848953)
chr7 (177-214)||(47263509-47263546)
[»] chr3 (27 HSPs)
chr3 (177-233)||(3323784-3323839)
chr3 (176-218)||(18554507-18554549)
chr3 (178-219)||(3716225-3716266)
chr3 (177-216)||(30710012-30710051)
chr3 (178-233)||(47649551-47649605)
chr3 (178-216)||(27026772-27026810)
chr3 (178-216)||(36028932-36028970)
chr3 (177-234)||(1417075-1417132)
chr3 (177-218)||(1417710-1417751)
chr3 (177-218)||(26298807-26298848)
chr3 (177-233)||(24695384-24695439)
chr3 (177-233)||(47924090-47924146)
chr3 (179-218)||(16264174-16264213)
chr3 (178-233)||(27038100-27038155)
chr3 (177-218)||(6794933-6794974)
chr3 (480-549)||(33271916-33271985)
chr3 (177-218)||(37466116-37466157)
chr3 (177-218)||(48438039-48438080)
chr3 (478-518)||(38850326-38850366)
chr3 (478-518)||(54365012-54365052)
chr3 (177-218)||(21711050-21711092)
chr3 (178-212)||(28504090-28504124)
chr3 (177-218)||(40593004-40593048)
chr3 (179-212)||(7167072-7167105)
chr3 (179-212)||(30236448-30236481)
chr3 (478-515)||(30797862-30797899)
chr3 (477-518)||(49042141-49042182)
[»] chr5 (17 HSPs)
chr5 (178-233)||(3880113-3880167)
chr5 (176-218)||(10281687-10281729)
chr5 (177-218)||(11182065-11182106)
chr5 (177-218)||(19588571-19588612)
chr5 (347-466)||(13638652-13638768)
chr5 (177-216)||(14520056-14520095)
chr5 (177-216)||(42126638-42126677)
chr5 (176-218)||(42127639-42127681)
chr5 (177-218)||(28832085-28832126)
chr5 (177-216)||(11917206-11917245)
chr5 (179-216)||(213790-213827)
chr5 (278-323)||(13638576-13638621)
chr5 (178-218)||(17004192-17004232)
chr5 (188-218)||(24555833-24555863)
chr5 (188-218)||(24596864-24596894)
chr5 (176-233)||(6741665-6741720)
chr5 (179-212)||(31180100-31180133)
[»] scaffold0148 (1 HSPs)
scaffold0148 (178-219)||(10551-10592)
[»] chr6 (15 HSPs)
chr6 (177-218)||(5572827-5572868)
chr6 (177-234)||(31086693-31086750)
chr6 (177-218)||(18232670-18232711)
chr6 (182-218)||(21801584-21801620)
chr6 (177-216)||(5017703-5017742)
chr6 (178-216)||(31936414-31936452)
chr6 (177-214)||(21355867-21355904)
chr6 (177-218)||(31979338-31979379)
chr6 (182-218)||(4629786-4629822)
chr6 (182-218)||(24436202-24436238)
chr6 (478-516)||(7513029-7513067)
chr6 (478-512)||(30700434-30700468)
chr6 (177-214)||(5757707-5757744)
chr6 (177-218)||(10077396-10077437)
chr6 (179-216)||(30126031-30126067)
[»] chr1 (18 HSPs)
chr1 (177-218)||(775497-775538)
chr1 (177-216)||(29651637-29651676)
chr1 (177-218)||(13598221-13598262)
chr1 (177-218)||(16124748-16124789)
chr1 (178-215)||(26645129-26645166)
chr1 (177-213)||(47099054-47099090)
chr1 (177-216)||(21536800-21536839)
chr1 (178-217)||(27104601-27104640)
chr1 (177-216)||(40816964-40817003)
chr1 (178-216)||(47704170-47704208)
chr1 (177-218)||(19072751-19072792)
chr1 (177-218)||(19120641-19120682)
chr1 (177-214)||(37069597-37069634)
chr1 (178-218)||(9476087-9476127)
chr1 (187-234)||(3281519-3281566)
chr1 (180-218)||(9024064-9024102)
chr1 (478-520)||(40568445-40568487)
chr1 (188-218)||(47704222-47704252)
[»] scaffold0006 (2 HSPs)
scaffold0006 (177-218)||(5506-5547)
scaffold0006 (177-218)||(2317-2358)
[»] scaffold0176 (1 HSPs)
scaffold0176 (177-218)||(17091-17132)
[»] scaffold0087 (2 HSPs)
scaffold0087 (177-214)||(44190-44227)
scaffold0087 (177-216)||(37063-37102)
[»] scaffold0036 (1 HSPs)
scaffold0036 (177-216)||(85512-85551)


Alignment Details
Target: chr2 (Bit Score: 634; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 9 - 735
Target Start/End: Complemental strand, 32178628 - 32177910
Alignment:
Q  9 agcagagagttaaggtaggcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtg 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178628 agcagagagttaaggtacgcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtg 32178529  T
Q  109 taaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataattcacaacatctttgctccacacatctttgttattcattggt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178528 taaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataattcacaacatctttgctccacacatctttgttattcattggt 32178429  T
Q  209 gtgattttgtatgcaattcacaacacctacaaaaccacttgaa-------gagtgctcacacttataaacaaattatcataccatatctcatcaaatgta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178428 gtgattttgtatgcaattcacaacacctacaaaaccacttgaaagatgaagagtgctcacacttataaacaaattatcataccatatctcatcaaatgta 32178329  T
Q  302 agaatcttaccaataattaaaaacacaccaaaaggcctagaagttgtacatatgttgccttttctcttctagaggtggtgccaaatttatgaatgagaca 401  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  32178328 agaatcttaccaataattaaaaacacaccaaaaggactagaagttgtacatatgttgccttttctcttctagaggtggtgccaaatttatga-------- 32178237  T
Q  402 tatataagcaagtaagtaaatgagaaatggagtgagggctttggcctatatagtagccaatgtgaatctgtcagtttttatgatagaatactatgacgta 501  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32178236 -------gcaagtaagtaaatgagaaatggagtgagggctttggcctatatagtagccaatgtgaatctgtcactttttatgatagaatactatgacgta 32178144  T
Q  502 atttgatctatgtagccaatctcatttaatatagtaaagcttggttgtgacattttagcaagggagtttttcgggttaagtagcattactcatttctaaa 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32178143 atttgatctatgtagccaatctcatttaatatagtaaagcttggttgtgacattttagcaagggagtttttcgggttaagtagcattactcatttctaaa 32178044  T
Q  602 agcaacattatttatagcaaaacaaaatatcacgaacgtctcacaaattgattgctgccattggatcttctttggtggaaatcatcgatggttggataaa 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32178043 agcaacattatttatagcaaaacaaaatatcacgaacgtctcacaaattgattgctaccattggatcttctttggtggaaatcatcgatggttggataaa 32177944  T
Q  702 aattagaaattagaaactagtcgatgacaacatt 735  Q
    |||||||||||||||||||||||  |||||||||    
T  32177943 aattagaaattagaaactagtcggcgacaacatt 32177910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 248 - 546
Target Start/End: Complemental strand, 32187154 - 32186860
Alignment:
Q  248 tgaagagtgctcacacttataaacaaattatcataccatatctcatcaaatgtaagaatcttaccaataattaaaaacacaccaaaaggcctagaagttg 347  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||  || | ||||    
T  32187154 tgaagagtgctcacacctataaactcattatcataccatatctcatcaagtgtaagaatcttatcaataattaaaaacacaacaaaagggataaaggttg 32187055  T
Q  348 tacatatgttgccttttctcttctagaggtggtgccaaatttatgaatgagacatatataagcaagtaagtaaatgagaaatggagtgagggctttggcc 447  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     |||||||||| | ||| ||| ||||||    
T  32187054 tacatatgtttccttttctcttctagaggtggtgccaaatttatgcatgagacatatataagcaagtat----atgagaaatgaaatgatggccttggcc 32186959  T
Q  448 tatatagtagccaatgtgaatctgtcagtttttatgatagaatactatgacgtaatttgatctatgtagccaatctcatttaatatagtaaagcttggt 546  Q
    || ||||||||||| ||| ||| |||| |||||||||||||| ||||| ||||||||| || |||||||||||||| ||||||||  ||||||||||||    
T  32186958 tacatagtagccaacgtggatccgtcactttttatgatagaacactataacgtaatttaatttatgtagccaatcttatttaatacggtaaagcttggt 32186860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 32159213 - 32159061
Alignment:
Q  14 agagttaaggtaggcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaag 113  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32159213 agagttaaggtaagcaaatctgaggatcataaagagcttgcattcaatattgatagaaatgaagaagtgagtgatgttttt-gaaggtgttagtgtaaag 32159115  T
Q  114 tggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32159114 tggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataat 32159061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 32175493 - 32175366
Alignment:
Q  14 agagttaaggtaggcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaag 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  32175493 agagttaaggtaggcaaatctgaggatcataaagagattgcattcaatattgatagaaatgaagaagtgagtgatgt-ttttggaggtgttagtgtaaag 32175395  T
Q  114 tggaaactaatatgtatacaagtcgactc 142  Q
    ||||||||||| || |||||||| |||||    
T  32175394 tggaaactaatttgcatacaagtggactc 32175366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 259 - 457
Target Start/End: Complemental strand, 36711547 - 36711341
Alignment:
Q  259 cacacttataaacaaattatcataccatatctcatcaaatgtaagaatcttaccaataattaaaa------------acacaccaaaaggcctagaagtt 346  Q
    |||||||||||||| |||||||||||||||||| |||||  ||||| ||||||||||||||||||            ||||| ||||||| ||||| |||    
T  36711547 cacacttataaacacattatcataccatatctcgtcaaacataagattcttaccaataattaaaatattaattaaaaacacaacaaaagggctagaggtt 36711448  T
Q  347 gtacatatgttgccttttctcttctagaggtggtgccaaatttatgaatgagacatatataagcaagtaagtaaatgagaaatggagtgagggctttggc 446  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||| |||||||| |||||| |    |||||||||||| ||| || |||||| |||||    
T  36711447 gtacatatgttgtcttttctcttctagaggtgatgccaaatgtatgcatgagacaaatataaac----aagtaaatgagagatgaagagagggccttggc 36711352  T
Q  447 ctatatagtag 457  Q
    ||| |||||||    
T  36711351 ctacatagtag 36711341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 32111767 - 32111663
Alignment:
Q  54 cattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaatta 153  Q
    |||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||     
T  32111767 cattcaatctagatagagatgaagaagtgagtgatgttttt-gaaggtgttagtgtaaagtggaaactaatatgcatacaagtcgactcatcaagagttc 32111669  T
Q  154 gacatt 159  Q
    ||||||    
T  32111668 gacatt 32111663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 32119850 - 32119732
Alignment:
Q  14 agagttaaggtaggcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaag 113  Q
    |||||||| | |||||||||||| ||||||||| ||  || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32119850 agagttaaagcaggcaaatctgaagatcataaaaagcttgaattcaatattgatagaaatgaagaagtgagtgatgt-ttttgaaggtattagtgtaaag 32119752  T
Q  114 tggaaactaatatgtataca 133  Q
    ||||||||||| || |||||    
T  32119751 tggaaactaatttgcataca 32119732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 32183514 - 32183387
Alignment:
Q  14 agagttaaggtaggcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaag 113  Q
    |||||||| ||| ||||||||| ||| | |||||||  | |||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  32183514 agagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatg-ttttcgaaggtattagtgtaaag 32183416  T
Q  114 tggaaactaatatgtatacaagtcgactc 142  Q
    ||||||||||| || ||| |||| |||||    
T  32183415 tggaaactaatttgcatagaagtggactc 32183387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 32205346 - 32205466
Alignment:
Q  14 agagttaaggtaggcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaag 113  Q
    |||||||| ||| |||||||| | ||||||||| ||  | |||||||||||||||||  |||||||||||||||||  |||||||||| |||| ||||||    
T  32205346 agagttaaagtaagcaaatctcatgatcataaaaagctttcattcaatattgatagaggtgaagaagtgagtgatg-attttgaaggtattagagtaaag 32205444  T
Q  114 tggaaactaatatgtatacaag 135  Q
    |||||| ||||||| |||||||    
T  32205445 tggaaattaatatgcatacaag 32205466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 8039924 - 8039869
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaacac 234  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  8039924 tttgctccacacatctttgttattcattggtgtgattttgtacg-aattcacaacac 8039869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 16940440 - 16940496
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  16940440 ctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 17011105 - 17011161
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  17011105 ctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 32211107 - 32211187
Alignment:
Q  54 cattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaagtggaaactaatatgtatacaag 135  Q
    |||||||||||||||||  |||||||||||||||||  |||||||||| |||  |||||||||||| ||||||| |||||||    
T  32211107 cattcaatattgatagaggtgaagaagtgagtgatg-attttgaaggtattacagtaaagtggaaattaatatgcatacaag 32211187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 34682567 - 34682622
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaacac 234  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  34682567 tttgctccacacatctttgttattcattggtgtggttttgtacg-aattcacaacac 34682622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 36757992 - 36758031
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36757992 ctttgctccacacatctttgttattcattggtgtgatttt 36758031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 39482800 - 39482746
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||||||||    
T  39482800 tttgctccacacatctttgttattcatttgtgtgattttgtctg-aattcacaaca 39482746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 42039900 - 42039939
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42039900 ctttgctccacacatctttgttattcattggtgtgatttt 42039939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 20522086 - 20522045
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  20522086 cttttctccacacatctttgttattcattggtgtgattttgt 20522045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 10445678 - 10445718
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  10445678 tttgctccacacatctttgtttttcattggtgtgattttgt 10445718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 13569194 - 13569155
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  13569194 ctttactccacacatctttgttattcattggtgtgatttt 13569155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 23078703 - 23078742
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  23078703 ctttgctccacacatctttgtttttcattggtgtgatttt 23078742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 10707485 - 10707523
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  10707485 tttgctccacacatctttgttattcatgggtgtgatttt 10707523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 17865069 - 17865028
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  17865069 cttttctccacacatttttgttattcattggtgtgattttgt 17865028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 21629816 - 21629776
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  21629816 ctttgctccacacatctttgtt-ttcattggtgtgattttgt 21629776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 28259408 - 28259445
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28259408 ctttgctccacacatctttgtttttcattggtgtgatt 28259445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 33528852 - 33528893
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  33528852 ctttgctccacacatctttgttattcattggtggaattttgt 33528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 34388725 - 34388686
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  34388725 ctttgctccacacatcttcgttatttattggtgtgatttt 34388686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 8390384 - 8390426
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgta 219  Q
    |||| |||||||||||||| || ||||||||||||||||||||    
T  8390384 ctttactccacacatctttatttttcattggtgtgattttgta 8390426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 11099163 - 11099196
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||||||||| |||||||||||||    
T  11099163 ttgctccacacatctttgtttttcattggtgtga 11099196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 40014794 - 40014753
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||| |||||||||||  ||||||||||||||||||    
T  40014794 ctttgctccatacatctttgtttgtcattggtgtgattttgt 40014753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 531
Target Start/End: Original strand, 41545610 - 41545663
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagccaatctcatttaat 531  Q
    |||||||||||| |||||||| ||||||||| ||| ||||| |||||| |||||    
T  41545610 tttatgatagaacactatgacttaatttgatttatttagccgatctcacttaat 41545663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 3796754 - 3796808
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3796754 tttgctccacacatctttgttattcattggtgtgattttgtatg-aattcacaaca 3796808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 54867048 - 54866993
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  54867048 ctttgctccacacatctttgttattcattggtgtgattttgtctg-aattcacaaca 54866993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 24333675 - 24333621
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24333675 tttgctccacacatctttgttattcattggtgtgattttgtacg-aattcacaaca 24333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 25862253 - 25862310
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaacacc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  25862253 ctttgctccacacatctttgttattcattggtgtgattttgtccg-aattcacaacacc 25862310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 46676402 - 46676339
Alignment:
Q  350 catatgttgccttttctcttctagaggtggtgccaaatttatgaatgagacatatataagcaagt 414  Q
    |||||||| |||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||    
T  46676402 catatgtttccttttctcttctagatgtggtgctaaatttatgcatgagaca-atataagcaagt 46676339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 16624240 - 16624279
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16624240 ctttgctccacacatctttgttattcattggtgtgatttt 16624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 16630911 - 16630950
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16630911 ctttgctccacacatctttgttattcattggtgtgatttt 16630950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 10047245 - 10047204
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  10047245 ctttgctccacacatttttgttattcattggtgtgattttgt 10047204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 5147543 - 5147504
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  5147543 ctttgctccacacatcattgttattcattggtgtgatttt 5147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 8689709 - 8689748
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  8689709 ctttactccacacatctttgttattcattggtgtgatttt 8689748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 51421935 - 51421982
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagccaatctca 525  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  51421935 tttatgatagaacattatgacgtaatttgatccatgtagccaatctca 51421982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 38152672 - 38152710
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  38152672 tttgctctacacatctttgttattcattggtgtgatttt 38152710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 5397069 - 5397102
Alignment:
Q  183 tccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||    
T  5397069 tccacacatctttgttattcattggtgtgatttt 5397102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 39245855 - 39245818
Alignment:
Q  181 gctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  39245855 gctccacacatctttattattcattggtgtgattttgt 39245818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 34496054 - 34496093
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttg 217  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  34496054 ctttgctccacacatctttgtt-ttcattggtgtgattttg 34496093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 5143125 - 5143086
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  5143125 ctttgctccacacatcattgttattcattggtttgatttt 5143086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 1983530 - 1983570
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  1983530 ctttgctccacacatctttgtt-ttcatttgtgtgattttgt 1983570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 29760503 - 29760470
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||||||||| |||||||||||||    
T  29760503 ttgctccacacatctttgtttttcattggtgtga 29760470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 42599808 - 42599849
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||    
T  42599808 ctttgcttcacacatctttattattcattagtgtgattttgt 42599849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 9766051 - 9766107
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaacac 234  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  9766051 ctttgctccacacatctttgttattcattggtgtgattttgtctg-aattcacaacac 9766107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 6127083 - 6127029
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  6127083 tttgctccacacatctttgttattcattggtgtgattttgtacg-aattcacaaca 6127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 5702715 - 5702755
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5702715 tttgctccacacatctttgttattcattggtgtgattttgt 5702755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 19175988 - 19176027
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19175988 ctttgctccacacatctttgttattcattggtgtgatttt 19176027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 4455894 - 4455838
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||| |||||||||||||||||||  | | |||||||||||    
T  4455894 ctttgctccacacatctttgatattcattggtgtgatttttaagggaattcacaaca 4455838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 26403463 - 26403503
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  26403463 tttgctccacacatctttgttattcattggtgtggttttgt 26403503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 4696834 - 4696875
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  4696834 ctttgttccacacatctttgttattcattgatgtgattttgt 4696875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 7412203 - 7412166
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7412203 ctttgctccacacatctttgtttttcattggtgtgatt 7412166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 28307421 - 28307384
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  28307421 tttgctccacacatctttgtt-ttcattggtgtgatttt 28307384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 6813543 - 6813503
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  6813543 ctttgctcaacacatctttgtt-ttcattggtgtgattttgt 6813503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 10689379 - 10689412
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||||||||| |||||||||||||    
T  10689379 ttgctccacacatctttgtttttcattggtgtga 10689412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 23799808 - 23799863
Alignment:
Q  176 tctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||| ||| || |||||||||||||||||||| | |||||||||||    
T  23799808 tctttgctccacacatatttttt-ttcattggtgtgattttgtacg-aattcacaaca 23799863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 36979238 - 36979205
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||||||||| |||||||||||||    
T  36979238 ttgctccacacatctttgtttttcattggtgtga 36979205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 29159668 - 29159613
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  29159668 ctttgctccacacatctttgttattcattggtgtgattttgtacg-aattcacaaca 29159613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 49091528 - 49091472
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  49091528 ctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 49091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 4796901 - 4796942
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4796901 ctttgctccacacatctttgttattcattggtgtgattttgt 4796942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 46516542 - 46516583
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46516542 ctttgctccacacatctttgttattcattggtgtgattttgt 46516583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 2647962 - 2648013
Alignment:
Q  181 gctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctg-aattcacaaca 2648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 9235788 - 9235829
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  9235788 ctttgctccacacatctttgttatttattggtgtgattttgt 9235829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 23403244 - 23403285
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  23403244 ctttgctccacacatctttgttattcattggtatgattttgt 23403285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 20283954 - 20283914
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  20283954 tttgctccacacatctttgttattcataggtgtgattttgt 20283914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 9190240 - 9190279
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttg 217  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  9190240 tttgctccacacatctttgtttttcattggtgtgattttg 9190279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 518
Target Start/End: Complemental strand, 31681096 - 31681057
Alignment:
Q  479 ttatgatagaatactatgacgtaatttgatctatgtagcc 518  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  31681096 ttatgatagaatactatgacgtaatttgatccatgtagcc 31681057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 35960680 - 35960641
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  35960680 ctttgctccacacatctttgtttttcattggtgtgatttt 35960641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 3047118 - 3047077
Alignment:
Q  176 tctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  3047118 tctttgctccacacatctttgtt-ttcattggtgtgattttgt 3047077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 55797 - 55764
Alignment:
Q  185 cacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||    
T  55797 cacacatctttgttattcattggtgtgattttgt 55764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 2479205 - 2479168
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2479205 ctttgctccacacatctttgtttttcattggtgtgatt 2479168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 33332681 - 33332722
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  33332681 ctttggtccacacatcttggttattcattggtgtgattttgt 33332722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 518
Target Start/End: Complemental strand, 26332950 - 26332910
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagcc 518  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  26332950 tttatgatagaatattatgacgtaatttgatccatgtagcc 26332910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 518
Target Start/End: Original strand, 44951360 - 44951400
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagcc 518  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  44951360 tttatgatagaacactatgacgtaatttgatccatgtagcc 44951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 9185395 - 9185434
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttg 217  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  9185395 tttgctccacacatctttgtttttcattagtgtgattttg 9185434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 44401205 - 44401162
Alignment:
Q  477 ttttatgatagaatactatgacgtaatttgatctatgtagccaa 520  Q
    ||||||||||||| | ||||||||||||||||| ||||||||||    
T  44401205 ttttatgatagaacattatgacgtaatttgatccatgtagccaa 44401162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 2057819 - 2057786
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||||||||| |||||||||||||    
T  2057819 ttgctccacacatctttgtttttcattggtgtga 2057786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 44848916 - 44848953
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  44848916 ctttgctccacacatccttgtttttcattggtgtgatt 44848953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 47263546 - 47263509
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  47263546 ctttgctccacgcatctttgtttttcattggtgtgatt 47263509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 3323784 - 3323839
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  3323784 ctttgctccacacatctttgttattcattggtgtgattttgtacg-aattcacaaca 3323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 18554507 - 18554549
Alignment:
Q  176 tctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18554507 tctttgctccacacatctttgttattcattggtgtgattttgt 18554549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 3716225 - 3716266
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3716225 tttgctccacacatctttgttattcattggtgtgattttgta 3716266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 30710012 - 30710051
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30710012 ctttgctccacacatctttgttattcattggtgtgatttt 30710051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 47649605 - 47649551
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  47649605 tttgttccacacatctttgttattcattggtgtgattttgtacg-aattcacaaca 47649551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 27026810 - 27026772
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27026810 tttgctccacacatctttgttattcattggtgtgatttt 27026772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 36028970 - 36028932
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36028970 tttgctccacacatctttgttattcattggtgtgatttt 36028932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 1417132 - 1417075
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaacac 234  Q
    |||| |||||||||||||| ||||||||||||||||||||||  | ||||||||||||    
T  1417132 ctttactccacacatctttattattcattggtgtgattttgtccggaattcacaacac 1417075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 1417710 - 1417751
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  1417710 ctttgctccacacatctttgtttttcattggtgtgattttgt 1417751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 26298848 - 26298807
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  26298848 ctttgatccacacatctttgttattcattggtgtgattttgt 26298807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 24695384 - 24695439
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||    
T  24695384 ctttgctccacacatctttattattcatttgtgtgattttgtacg-aattcacaaca 24695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 47924090 - 47924146
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||| |||||||||||||||||||||||||||||||||| |||   |||||||||||    
T  47924090 ctttactccacacatctttgttattcattggtgtgatttagtaccgaattcacaaca 47924146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 16264213 - 16264174
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  16264213 ttgctccacacgtctttgttattcattggtgtgattttgt 16264174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 27038155 - 27038100
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    ||||||||||||||||| ||||||||||||||||||||| ||   |||||||||||    
T  27038155 tttgctccacacatcttagttattcattggtgtgattttttaccgaattcacaaca 27038100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 6794933 - 6794974
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  6794933 ctttgctccacacatcgttgtttttcattggtgtgattttgt 6794974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 549
Target Start/End: Complemental strand, 33271985 - 33271916
Alignment:
Q  480 tatgatagaatactatgacgtaatttgatctatgtagccaatctcatttaatatagtaaagcttggttgt 549  Q
    |||||||||| |||||||||| ||||||||||||||||||| | || ||||||   |||||||| |||||    
T  33271985 tatgatagaacactatgacgtcatttgatctatgtagccaaccccacttaataagataaagcttagttgt 33271916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 37466157 - 37466116
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  37466157 ctttgctcctcacatctttgttatttattggtgtgattttgt 37466116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 48438080 - 48438039
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  48438080 ctttgctccacacatccttgttattcattgatgtgattttgt 48438039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 518
Target Start/End: Original strand, 38850326 - 38850366
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagcc 518  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  38850326 tttatgatagaacactatgacgtaatttgatccatgtagcc 38850366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 518
Target Start/End: Complemental strand, 54365052 - 54365012
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagcc 518  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  54365052 tttatgatagaacactatgacgtaatttgatccatgtagcc 54365012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 21711092 - 21711050
Alignment:
Q  177 ctttgctccacacatctttgttattca-ttggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  21711092 ctttgctccacacatctttgttattcatttggtgtgatgttgt 21711050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 28504090 - 28504124
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtga 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  28504090 tttgctccacacatcattgttattcattggtgtga 28504124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 40593004 - 40593048
Alignment:
Q  177 ctttgctccacacatctttgt---tattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||   |||||||||||||||||||||    
T  40593004 ctttgctccacacatctttgttgttattcattggtgtgattttgt 40593048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 7167105 - 7167072
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||||||||| |||||||||||||    
T  7167105 ttgctccacacatctttgtttttcattggtgtga 7167072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 30236448 - 30236481
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    ||||||||||||||||||||||| ||||||||||    
T  30236448 ttgctccacacatctttgttatttattggtgtga 30236481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 30797899 - 30797862
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgta 515  Q
    |||||||||||| | |||||||||||||||||||||||    
T  30797899 tttatgatagaacattatgacgtaatttgatctatgta 30797862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 49042141 - 49042182
Alignment:
Q  477 ttttatgatagaatactatgacgtaatttgatctatgtagcc 518  Q
    ||||||||||||| |||||| |||||||||||| ||||||||    
T  49042141 ttttatgatagaacactatggcgtaatttgatccatgtagcc 49042182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 3880167 - 3880113
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  3880167 tttgctccacacatctttgttattcattggtgtgattttgtacg-aattcacaaca 3880113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 10281729 - 10281687
Alignment:
Q  176 tctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10281729 tctttgctccacacatctttgttattcattggtgtgattttgt 10281687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 11182065 - 11182106
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11182065 ctttgctccacacatctttgttattcattggtgtgattttgt 11182106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 19588612 - 19588571
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19588612 ctttgctccacacatctttgttattcattggtgtgattttgt 19588571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 466
Target Start/End: Original strand, 13638652 - 13638768
Alignment:
Q  347 gtacatatgttgccttttc-tcttctagaggtggtgccaaatttatgaatgagacatatataagcaagtaagtaaatgagaaatggagtgagggctttgg 445  Q
    ||||||||||||||||||  ||||   ||||||||| |||||||||| |||||||||||||||||    || ||||||||||| | ||||||||  ||||    
T  13638652 gtacatatgttgcctttttatctttcggaggtggtgtcaaatttatgcatgagacatatataagc----aaataaatgagaaaagaagtgagggtcttgg 13638747  T
Q  446 cctatatagtagccaatgtga 466  Q
    |||| || || ||||||||||    
T  13638748 cctacatggtggccaatgtga 13638768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 14520095 - 14520056
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14520095 ctttgctccacacatctttgttattcattggtgtgatttt 14520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 42126638 - 42126677
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42126638 ctttgctccacacatctttgttattcattggtgtgatttt 42126677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 42127639 - 42127681
Alignment:
Q  176 tctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  42127639 tctttgctccacacatctttgttattcattagtgtgattttgt 42127681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 28832126 - 28832085
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  28832126 ctttgctccacacatctttgttattcattggtatgattttgt 28832085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 11917206 - 11917245
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  11917206 ctttgcttcacacatctttgttattcattggtgtgatttt 11917245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 213790 - 213827
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||| |||||||||||||||||||||||||||||||    
T  213790 ttgctctacacatctttgttattcattggtgtgatttt 213827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 13638576 - 13638621
Alignment:
Q  278 tcataccatatctcatcaaatgtaagaatcttaccaataattaaaa 323  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||    
T  13638576 tcataccatatctcatcaaatgtaagactcttggcaataattaaaa 13638621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 17004192 - 17004232
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  17004192 tttgctccacacctctttgtttttcattggtgtgattttgt 17004232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 24555833 - 24555863
Alignment:
Q  188 acatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||    
T  24555833 acatctttgttattcattggtgtgattttgt 24555863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 24596864 - 24596894
Alignment:
Q  188 acatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||    
T  24596864 acatctttgttattcattggtgtgattttgt 24596894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 6741720 - 6741665
Alignment:
Q  176 tctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaaca 233  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||| || |||||||||||    
T  6741720 tctttgctccacacatctttgtt-ttcattgatgttattttgtctg-aattcacaaca 6741665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 31180133 - 31180100
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtga 212  Q
    |||||||||||||| |||||||||||||||||||    
T  31180133 ttgctccacacatcattgttattcattggtgtga 31180100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 10592 - 10551
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10592 tttgctccacacatctttgttattcattggtgtgattttgta 10551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 5572827 - 5572868
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5572827 ctttgctccacacatctttgttattcattggtgtgattttgt 5572868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 31086693 - 31086750
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgtatgcaattcacaacac 234  Q
    |||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||    
T  31086693 ctttgctccacacatctttgttcttcattggtgtgattttgtaccgaattcacaacac 31086750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 18232711 - 18232670
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  18232711 ctttgcttcacacatctttgttattcattggtgtgattttgt 18232670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 21801584 - 21801620
Alignment:
Q  182 ctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||||||||    
T  21801584 ctccacacatctttgttattcattggtgtgattttgt 21801620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 5017703 - 5017742
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  5017703 ctttgctccacacatctttgttattcattagtgtgatttt 5017742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 31936452 - 31936414
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  31936452 tttgctccacacatctttgtttttcattggtgtgatttt 31936414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 21355904 - 21355867
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21355904 ctttgctccacacatctttgtttttcattggtgtgatt 21355867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 31979379 - 31979338
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  31979379 ctttgctccacacatctttgttatttagtggtgtgattttgt 31979338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 4629822 - 4629786
Alignment:
Q  182 ctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||| ||||||||||||||||||||||    
T  4629822 ctccacacatctttattattcattggtgtgattttgt 4629786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 24436202 - 24436238
Alignment:
Q  182 ctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24436202 ctccacacatctttgttattcattggtgttattttgt 24436238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 516
Target Start/End: Complemental strand, 7513067 - 7513029
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtag 516  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  7513067 tttatgatagaacattatgacgtaatttgatctatgtag 7513029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 512
Target Start/End: Complemental strand, 30700468 - 30700434
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctat 512  Q
    |||||||||||||| ||||||||||||||||||||    
T  30700468 tttatgatagaatattatgacgtaatttgatctat 30700434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 5757707 - 5757744
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  5757707 ctttgctccacacttctttgtttttcattggtgtgatt 5757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 10077396 - 10077437
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||| | |||||||| ||||||||||||    
T  10077396 ctttgctccacacatcttcgctattcattagtgtgattttgt 10077437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 30126031 - 30126067
Alignment:
Q  179 ttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30126031 ttgctccacacatctttgtt-ttcattggtgtgatttt 30126067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 775538 - 775497
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  775538 ctttgctccacacatctttgttattcattggtgtgattttgt 775497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 29651676 - 29651637
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29651676 ctttgctccacacatctttgttattcattggtgtgatttt 29651637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 13598262 - 13598221
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  13598262 ctttactccacacatctttgttattcattggtgtgattttgt 13598221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 16124748 - 16124789
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  16124748 ctttgcttcacacatctttgttattcattggtgtgattttgt 16124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 26645129 - 26645166
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattt 215  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26645129 tttgctccacacatctttgttattcattggtgtgattt 26645166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 47099054 - 47099090
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgat 213  Q
    |||||||||||||||||||||||||||||||||||||    
T  47099054 ctttgctccacacatctttgttattcattggtgtgat 47099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 21536800 - 21536839
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  21536800 ctttgctccacacatctttgtttttcattggtgtgatttt 21536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 27104601 - 27104640
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttg 217  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  27104601 tttgctccacacatctttgtttttcattggtgtgattttg 27104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 40816964 - 40817003
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40816964 ctttgctccacacatctttgttattcattggtgtgttttt 40817003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 47704170 - 47704208
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgatttt 216  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  47704170 tttgctccacacatctttgttattcattgatgtgatttt 47704208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 19072792 - 19072751
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  19072792 ctttgttccacatatctttgttattcattggtgtgattttgt 19072751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 19120682 - 19120641
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  19120682 ctttgttccacatatctttgttattcattggtgtgattttgt 19120641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 37069634 - 37069597
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37069634 ctttgctccacacatctttgtttttcattggtgtgatt 37069597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 9476127 - 9476087
Alignment:
Q  178 tttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  9476127 tttgctctacacatctttgtttttcattggtgtgattttgt 9476087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 3281566 - 3281519
Alignment:
Q  187 cacatctttgttattcattggtgtgattttgtatgcaattcacaacac 234  Q
    ||||||||||||||||||||||||||||||  | | ||||||||||||    
T  3281566 cacatctttgttattcattggtgtgatttttaacggaattcacaacac 3281519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 9024064 - 9024102
Alignment:
Q  180 tgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  9024064 tgctccacacttctttgtttttcattggtgtgattttgt 9024102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 40568487 - 40568445
Alignment:
Q  478 tttatgatagaatactatgacgtaatttgatctatgtagccaa 520  Q
    |||||||||||| |||||| |||||||||||| ||||||||||    
T  40568487 tttatgatagaaaactatggcgtaatttgatccatgtagccaa 40568445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 47704222 - 47704252
Alignment:
Q  188 acatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||||    
T  47704222 acatctttgttattcattggtgtgattttgt 47704252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 5547 - 5506
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  5547 ctttactccacacatctttgttattcattggtgtgattttgt 5506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 2358 - 2317
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  2358 ctttgctccacacatctttgttattcttcggtgtgattttgt 2317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 17132 - 17091
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgattttgt 218  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  17132 ctttgctccacacatctttgttattcattcatgtgattttgt 17091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 44190 - 44227
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatt 214  Q
    |||||||||||||||||||||| |||||||||||||||    
T  44190 ctttgctccacacatctttgtttttcattggtgtgatt 44227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 37063 - 37102
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  37063 ctttgctccacacatctttgtttttcatcggtgtgatttt 37102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 85551 - 85512
Alignment:
Q  177 ctttgctccacacatctttgttattcattggtgtgatttt 216  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  85551 ctttgctctacacatctttgtttttcattggtgtgatttt 85512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University