View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12918_low_13 (Length: 318)
Name: NF12918_low_13
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12918_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38149216 - 38148903
Alignment:
| Q |
1 |
ctgcgtattctcatatgaataccatgttgttttgcacatatcacagctgcttggacttgtgaatcatggaatggtgtgaatatgaaatctggttttggca |
100 |
Q |
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| T |
38149216 |
ctgcgtattctcatatgaataccatgttgttttgcacatatcacagctgcttggacttgtgaatcatggaatggtgtgaatatgaaatctggttttggca |
38149117 |
T |
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| Q |
101 |
ctgaaggcaataaatacctcaggttttgagcagtggattcaaggattgtagtgtaggacttattggttgaggtgtagattgaggagggaaattggtttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38149116 |
ctgaaggcaataaatacctcaggttttgagcagtggattcaaggattgaagtgtaggacttattggttgaggtgtagattgaagagggaaattggtttgg |
38149017 |
T |
|
| Q |
201 |
aatttgagcatgaagtgataggcaattattgaaagtttcttcaattgaaactgaagtggaaagcggaacagatagcagaacaacaaaagttgctaggagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38149016 |
aatttgagcatgaagtgataggcaattattgaaagtttcttcaattgaaactgaagtggaaagcggaacagatagcagaacaacaaaagttgctaggagg |
38148917 |
T |
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| Q |
301 |
gacatcatagactg |
314 |
Q |
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|||||||||||||| |
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| T |
38148916 |
gacatcatagactg |
38148903 |
T |
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