View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12918_low_17 (Length: 251)
Name: NF12918_low_17
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12918_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 51121711 - 51121462
Alignment:
| Q |
4 |
atgtcgaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagtacattacgtcacatgttgtaatcaaaatgtaatcta |
103 |
Q |
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| T |
51121711 |
atgtagaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagtacattacgtcacatgttgtaatcaaaatgtaatcta |
51121612 |
T |
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| Q |
104 |
aaccat--gcatggaaaagaaaaagcggaaaatgatagaatgagacacaccattgtttggtagatttgatcttacgaaggaaaaatacttaagcagataa |
201 |
Q |
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| T |
51121611 |
aaccataagcatggaaaagaaaaggcggaaaattatagaatgagacacaccattgtttggtagatttgatcttacgtaggaaaaatgcttaagcagataa |
51121512 |
T |
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| Q |
202 |
aagtaacagcagaaaaaagtgtgttacaattaacaagtatatatgcaata |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121511 |
aagtaacagcagaaaaaagtgtgttacaattaacaagtatatatgcaata |
51121462 |
T |
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