View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12918_low_21 (Length: 218)
Name: NF12918_low_21
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12918_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11132582 - 11132382
Alignment:
| Q |
1 |
ccttggattggagaaacatgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcat |
100 |
Q |
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| T |
11132582 |
ccttggattggagaaacatgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcat |
11132483 |
T |
|
| Q |
101 |
aaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctaggaaaatttgttttggaaattcccccagctc |
200 |
Q |
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| T |
11132482 |
aaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctaggaaaatttgttttggaaattcccccagctc |
11132383 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
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| |
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| T |
11132382 |
c |
11132382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11155864 - 11155664
Alignment:
| Q |
1 |
ccttggattggagaaacatgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcat |
100 |
Q |
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| T |
11155864 |
ccttggattggagactcatggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcac |
11155765 |
T |
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| Q |
101 |
aaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctaggaaaatttgttttggaaattcccccagctc |
200 |
Q |
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| T |
11155764 |
aaccaaatgaatattctaattcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttggaaaatttgttttggaaattcctccggctc |
11155665 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
11155664 |
c |
11155664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 11196311 - 11196120
Alignment:
| Q |
1 |
ccttggattggagaaacatgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcat |
100 |
Q |
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| T |
11196311 |
ccttggattggagaaacatggggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcac |
11196212 |
T |
|
| Q |
101 |
aaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctaggaaaatttgttttggaaattcc |
192 |
Q |
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| T |
11196211 |
aaccaaatgaatattctaattgatgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcc |
11196120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 11199307 - 11199156
Alignment:
| Q |
1 |
ccttggattggagaaacatgggggaatcatgtcaacaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcat |
100 |
Q |
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| T |
11199307 |
ccttggattggagactcatggggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcac |
11199208 |
T |
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| Q |
101 |
aaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataacta |
152 |
Q |
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| T |
11199207 |
aaccacatgaatattctaattcatgtttatgaaggtgagaggaaaataacta |
11199156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 11160692 - 11160575
Alignment:
| Q |
35 |
acaatgattcctaggaataccttaattcctaccagcatggaacaagtattcacaacacatcttcataaccaaaccaatattttgattcatgtttacgagg |
134 |
Q |
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| T |
11160692 |
acaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaattcatgtttatgaag |
11160593 |
T |
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| Q |
135 |
gtgaaagaaaaataacta |
152 |
Q |
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| T |
11160592 |
gtgagaggaaaataacta |
11160575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 11170032 - 11169972
Alignment:
| Q |
112 |
tattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctagga |
172 |
Q |
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| T |
11170032 |
tatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctagga |
11169972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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