View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12918_low_5 (Length: 451)
Name: NF12918_low_5
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12918_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 41053940 - 41053512
Alignment:
| Q |
18 |
actgaagtgttaaaataaataacaagtcgcgtgggtctcgagctcacgtacaactatatgttttatattaattaattgagctctacggtgccaacttcaa |
117 |
Q |
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| T |
41053940 |
actgaagtgttaaaataaataacaagtcgcgtgggtctcgagctcacgtacaactatatgttttatattaattaattgagctctacggtgccaacttcaa |
41053841 |
T |
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| Q |
118 |
cccaatttaataacaa---tatatatttattgaacaaacttccaaaatcaaccaaccatcttcatagttcgttgttatcagaaaccgagttagatacata |
214 |
Q |
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| T |
41053840 |
cccaatttaataacaacaatatatatttattgaacaaacttccaaaatcaaccaaccatcttcatagttcgttgttatcagaaaccgagttagatacatc |
41053741 |
T |
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| Q |
215 |
tcaaacatataaaacagtaacaaaatttcatatttcactcacaaatatattaacattaaaactgtctc-aagattcaacaaca-ccttatactaggtttc |
312 |
Q |
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| T |
41053740 |
tcaaacatataaaacagtaacaaaatttcatatttcactcacaa--atattaacattaaaactatctcaaagattcaacaacacccttatactaggtttc |
41053643 |
T |
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| Q |
313 |
atgttgatgttttcttgatcataaactcatccctcacaggaaaaaaccatgtcacataaannnnnnnnnnnnnnnnnnnnnnnattattcatctcaacaa |
412 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41053642 |
atgttgatgttttcttaatcataaattcatccatcacaggaaaaaaccatgtcacataaattttttgttctttttttattcttattattcatctcaacaa |
41053543 |
T |
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| Q |
413 |
gtgtttgtgttcatgaagaaggtttcatctc |
443 |
Q |
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| T |
41053542 |
gtgtttgtgttcatgaagaaggtttcatctc |
41053512 |
T |
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