View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12918_low_8 (Length: 359)

Name: NF12918_low_8
Description: NF12918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12918_low_8
NF12918_low_8
[»] chr8 (7 HSPs)
chr8 (10-354)||(38321282-38321626)
chr8 (15-352)||(38300539-38300876)
chr8 (10-352)||(38317189-38317531)
chr8 (21-352)||(38309186-38309517)
chr8 (17-352)||(38326034-38326369)
chr8 (14-352)||(38313780-38314116)
chr8 (10-352)||(38306448-38306778)
[»] chr4 (1 HSPs)
chr4 (10-352)||(38849805-38850156)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 38321626 - 38321282
Alignment:
Q  10 aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321626 aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc 38321527  T
Q  110 cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321526 cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga 38321427  T
Q  210 gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321426 gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc 38321327  T
Q  310 atcatcctttcagccattctctttatagcttcatcttcatctctc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38321326 atcatcctttcagccattctctttatagcttcatcttcatctctc 38321282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 38300876 - 38300539
Alignment:
Q  15 atataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaa 114  Q
    |||||||||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||    
T  38300876 atataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaa 38300777  T
Q  115 gaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaac 214  Q
    | | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  |  ||  ||||||||||||||||||    
T  38300776 ggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaac 38300677  T
Q  215 aatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcat 314  Q
    ||| ||||||||| |||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  38300676 aattagccaatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcat 38300577  T
Q  315 cctttcagccattctctttatagcttcatcttcatctc 352  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  38300576 cctttcagccattctctttatatcttcatcttgatctc 38300539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 38317531 - 38317189
Alignment:
Q  10 aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc 109  Q
    |||||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||  |  |    
T  38317531 aatatatataaacttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggc 38317432  T
Q  110 cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga 209  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||   || ||||  ||   ||||||||||||    
T  38317431 cagaagaagtgcttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttga 38317332  T
Q  210 gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc 309  Q
    |||||||| |||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  38317331 gtaacaataagccaacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctc 38317232  T
Q  310 atcatcctttcagccattctctttatagcttcatcttcatctc 352  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  38317231 atcatcctttcagccattctctttataactttatcttcatctc 38317189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 38309517 - 38309186
Alignment:
Q  21 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 120  Q
    |||||||||||||||||| |||||| ||||||| || ||||||||||||||||  |||||||||| ||||||||| ||||||||||| ||||||||| ||    
T  38309517 acttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagta 38309418  T
Q  121 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 220  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||||||  |||||||||||||| ||||  ||  ||| ||||||||||||||||| ||    
T  38309417 cttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataag 38309318  T
Q  221 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 320  Q
    ||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  38309317 ccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaacatcctttc 38309218  T
Q  321 agccattctctttatagcttcatcttcatctc 352  Q
    | |||||||||||||| |||||||||||||||    
T  38309217 aaccattctctttatatcttcatcttcatctc 38309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 38326369 - 38326034
Alignment:
Q  17 ataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaaga 116  Q
    ||||||||||  ||||||  ||||||||| |||||||  | ||||||||||||| |||| | ||||||| | |||||| |||||||||||  ||||||||    
T  38326369 ataaacttaccccaaatataccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaaga 38326270  T
Q  117 aatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaa 216  Q
    | ||| || ||||||||||||| |||||||||||||||||||  || |||||| ||||||||||||||||||||  ||  ||||||||||||||||||||    
T  38326269 agtacgttggctagaatacttgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaa 38326170  T
Q  217 tgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcc 316  Q
    | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||    
T  38326169 taagccaatgttgaaaatttaatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatcatcc 38326070  T
Q  317 tttcagccattctctttatagcttcatcttcatctc 352  Q
    |||||||||||||||||||| |||||||||||||||    
T  38326069 tttcagccattctctttataacttcatcttcatctc 38326034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 38314116 - 38313780
Alignment:
Q  14 tatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccaga 113  Q
    ||||||||| |||||||| |||| || ||||||||||||   | |||||||||||||||||| ||||||||| | ||| ||||||| ||||||||| |||    
T  38314116 tatataaacgtacatcaactaggtcgagagatgaagactcagagttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctaga 38314017  T
Q  114 agaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaa 213  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||  ||||||||| ||||||||||| |||||| |  ||   ||| ||||||||||||    
T  38314016 agaagtacttttgctagagtacttggcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaa 38313917  T
Q  214 caatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatca 313  Q
    |||  ||||||| | ||||| |||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||| |||||||| |||||    
T  38313916 caagcagccaatcttgaaaatttcatccgtgggtcaagaactgctcccattgcaagaacaacac--tactcatcccaatatttcttaaacttgcccatca 38313819  T
Q  314 tcctttcagccattctctttatagcttcatcttcatctc 352  Q
    | |||| ||||||||||  || |  ||||||||||||||    
T  38313818 tacttttagccattctcgctacaaattcatcttcatctc 38313780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 38306778 - 38306448
Alignment:
Q  10 aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc 109  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||   | |||||||||||||||||| ||||||||| | |||||| |||| ||||||  |    
T  38306778 aatatatatgaacttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcatac 38306679  T
Q  110 cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga 209  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||| |  ||   ||| ||||||||    
T  38306678 cagaagaagtacttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttga 38306579  T
Q  210 gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc 309  Q
    |||||||| ||||||  | || || |||||||||||||            ||| ||||||||||||||||| ||||||||||||||||| |||||||| |    
T  38306578 gtaacaatcagccaaccttgagaatttcatccgtgggt------------ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgccc 38306491  T
Q  310 atcatcctttcagccattctctttatagcttcatcttcatctc 352  Q
    |||||||||| ||||||||||  |||| |||||||||||||||    
T  38306490 atcatccttttagccattctcgctataacttcatcttcatctc 38306448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 38849805 - 38850156
Alignment:
Q  10 aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctga---------atagttc 100  Q
    |||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||         |||||||    
T  38849805 aatatataaaaacttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttc 38849904  T
Q  101 tttgcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatc 200  Q
    |||| ||||||| || | | || |||| ||||| ||| |||||||||||| ||||||| ||||||||||  || | ||||||||||||||  ||  ||||    
T  38849905 tttgaaccccagcagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatc 38850004  T
Q  201 aagttttgagtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctca 300  Q
     |||||||| ||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38850005 cagttttgaataacaataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctca 38850104  T
Q  301 aacttgctcatcatcctttcagccattctctttatagcttcatcttcatctc 352  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  38850105 aacttgctcatcatcctttcagccattttctttatatcttcatcttcatctc 38850156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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